Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001257436 22 134 NP_001257437 22 134 NP_006281 22 134 XP_006715618 22 134 XP_005267176 22 134 NP_003817 18 1935 NP_001451 17 4312 NP_001017979 17 4312 NP_001153073 17 4312 NP_004240 17 4312 XP_005248274 17 4312 XP_005248272 17 4312 XP_005245096 17 4312 NP_787054 16 5631 NP_065761 16 7355 NP_006258 16 7355 XP_005264064 16 7355 XP_005264063 16 7355 XP_005264062 16 7355 XP_005264061 16 7355 XP_005264060 16 7355 XP_005264059 16 7355 NP_005545 15 9605 NP_005546 15 9605 NP_775109 15 9605 NP_000414 15 9605 NP_258259 15 9605 NP_056932 15 9605 NP_004684 15 9605 NP_003301 15 9605 NP_476429 15 9605 NP_002263 15 9605 XP_006719456 15 9605 XP_005268916 15 9605 XP_006719455 15 9605>NP_001257436 Length = 790 Score = 21.6 bits (44), Expect = 134 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TCFKRT AE Sbjct: 538 TCFKRTTAE 546>NP_001257437 Length = 790 Score = 21.6 bits (44), Expect = 134 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TCFKRT AE Sbjct: 538 TCFKRTTAE 546>NP_006281 Length = 790 Score = 21.6 bits (44), Expect = 134 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TCFKRT AE Sbjct: 538 TCFKRTTAE 546>XP_006715618 Length = 577 Score = 21.6 bits (44), Expect = 134 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TCFKRT AE Sbjct: 325 TCFKRTTAE 333>XP_005267176 Length = 790 Score = 21.6 bits (44), Expect = 134 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TCFKRT AE Sbjct: 538 TCFKRTTAE 546>NP_003817 Length = 312 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TCFKRTAAE 9 TC+K+T A+ Sbjct: 192 TCYKKTIAQ 200>NP_001451 Length = 471 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TCFKRT 6 TCF+RT Sbjct: 29 TCFERT 34>NP_001017979 Length = 221 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CFKRTAAE 9 CF++ AAE Sbjct: 169 CFQKVAAE 176>NP_001153073 Length = 204 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CFKRTAAE 9 CF++ AAE Sbjct: 169 CFQKVAAE 176>NP_004240 Length = 220 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CFKRTAAE 9 CF++ AAE Sbjct: 169 CFQKVAAE 176>XP_005248274 Length = 194 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CFKRTAAE 9 CF++ AAE Sbjct: 169 CFQKVAAE 176>XP_005248272 Length = 204 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CFKRTAAE 9 CF++ AAE Sbjct: 169 CFQKVAAE 176>XP_005245096 Length = 416 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TCFKRT 6 TCF+RT Sbjct: 29 TCFERT 34>NP_787054 Length = 163 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 TCFKRTA 7 TC++RT+ Sbjct: 69 TCYRRTS 75>NP_065761 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 CFKRTAA 8 C KRTAA Sbjct: 367 CEKRTAA 373>NP_006258 Length = 3224 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 3032 CFKKTFEE 3039>XP_005264064 Length = 2282 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 2090 CFKKTFEE 2097>XP_005264063 Length = 3136 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 2944 CFKKTFEE 2951>XP_005264062 Length = 3232 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 3040 CFKKTFEE 3047>XP_005264061 Length = 3232 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 3040 CFKKTFEE 3047>XP_005264060 Length = 3250 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 3058 CFKKTFEE 3065>XP_005264059 Length = 3258 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CFKRTAAE 9 CFK+T E Sbjct: 3066 CFKKTFEE 3073>NP_005545 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 259 KRTAAE 264>NP_005546 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 259 KRTAAE 264>NP_775109 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 259 KRTAAE 264>NP_000414 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 274 KRTAAE 279>NP_258259 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 226 KRTAAE 231>NP_056932 Length = 638 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 279 KRTAAE 284>NP_004684 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 245 KRTAAE 250>NP_003301 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 TCFKRTA 7 TC+ RT+ Sbjct: 82 TCYNRTS 88>NP_476429 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 296 KRTAAE 301>NP_002263 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 233 KRTAAE 238>XP_006719456 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 248 KRTAAE 253>XP_005268916 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 274 KRTAAE 279>XP_006719455 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KRTAAE 9 KRTAAE Sbjct: 284 KRTAAE 289Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.123 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 431,262 Number of extensions: 286 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |