Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1135 NP_001035957 18 1135 XP_006721990 18 1135 XP_006721989 18 1135 XP_005258041 18 1135 XP_006721988 18 1135 XP_006721987 18 1135 XP_006721986 18 1135 XP_005258040 18 1135 XP_006721985 18 1135 NP_003827 18 1935 NP_001177385 16 7355 NP_001177386 16 7355 NP_006082 16 7355 XP_005254182 16 7355 XP_005254181 16 7355 NP_001106819 15 9605 NP_001106820 15 9605 NP_001388 15 9605 NP_001106818 15 9605 XP_006722532 15 9605 XP_006722517 15 9605 XP_006710461 15 9605>NP_000258 Length = 2818 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2183 TVTEALLEI 2191>NP_001035957 Length = 2839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2204 TVTEALLEI 2212>XP_006721990 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2214 TVTEALLEI 2222>XP_006721989 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2214 TVTEALLEI 2222>XP_005258041 Length = 2836 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2183 TVTEALLEI 2191>XP_006721988 Length = 2846 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2193 TVTEALLEI 2201>XP_006721987 Length = 2849 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2214 TVTEALLEI 2222>XP_006721986 Length = 2854 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2201 TVTEALLEI 2209>XP_005258040 Length = 2857 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2204 TVTEALLEI 2212>XP_006721985 Length = 2867 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 T TEALLEI Sbjct: 2214 TVTEALLEI 2222>NP_003827 Length = 383 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TATEALLEI 9 TATEALL + Sbjct: 2 TATEALLRV 10>NP_001177385 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEALLEI 9 TEALLE+ Sbjct: 122 TEALLEL 128>NP_001177386 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEALLEI 9 TEALLE+ Sbjct: 122 TEALLEL 128>NP_006082 Length = 480 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEALLEI 9 TEALLE+ Sbjct: 127 TEALLEL 133>XP_005254182 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEALLEI 9 TEALLE+ Sbjct: 122 TEALLEL 128>XP_005254181 Length = 476 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TEALLEI 9 TEALLE+ Sbjct: 123 TEALLEL 129>NP_001106819 Length = 754 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATEALLEI 9 ATE +LEI Sbjct: 448 ATEIILEI 455>NP_001106820 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATEALLEI 9 ATE +LEI Sbjct: 461 ATEIILEI 468>NP_001388 Length = 770 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATEALLEI 9 ATE +LEI Sbjct: 464 ATEIILEI 471>NP_001106818 Length = 758 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATEALLEI 9 ATE +LEI Sbjct: 452 ATEIILEI 459>XP_006722532 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ATEALLEI 9 +TEALL++ Sbjct: 471 STEALLQV 478>XP_006722517 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ATEALLEI 9 +TEALL++ Sbjct: 527 STEALLQV 534>XP_006710461 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATEALLEI 9 ATE +LEI Sbjct: 447 ATEIILEI 454Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.121 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,225 Number of extensions: 432 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |