Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 21 229 XP_005262424 21 229 NP_001271324 17 3301 NP_064597 17 3301 XP_006720681 17 3301 XP_006720680 17 3301 XP_006720679 17 3301 XP_006720678 17 3301 XP_006720677 17 3301 NP_694540 17 4312 NP_001265552 17 4312 NP_001265553 17 4312 NP_004716 16 5631 NP_001007794 16 5631 NP_113623 16 7355 NP_001001344 15 9605 NP_068768 15 9605 NP_001243452 15 9605 NP_001277197 15 9605 NP_001035947 15 9605 NP_071890 15 9605 NP_543019 15 9605 NP_001728 15 9605 NP_001487 15 9605 XP_005274750 15 9605 XP_005274749 15 9605 XP_005274748 15 9605 XP_005274747 15 9605 XP_006724886 15 9605 XP_005274746 15 9605 XP_006723776 15 9605 XP_005260351 15 9605 XP_006715987 15 9605 XP_005250031 15 9605 XP_005250029 15 9605 XP_005250028 15 9605 XP_005250027 15 9605 NP_006340 15 9605>NP_722576 Length = 3080 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TAQTRCIK 8 TAQTRCIK Sbjct: 2409 TAQTRCIK 2416>XP_005262424 Length = 2875 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TAQTRCIK 8 TAQTRCIK Sbjct: 2204 TAQTRCIK 2211>NP_001271324 Length = 658 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>NP_064597 Length = 686 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>XP_006720681 Length = 468 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>XP_006720680 Length = 608 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>XP_006720679 Length = 681 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>XP_006720678 Length = 696 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>XP_006720677 Length = 725 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QTRCIKM 9 QT CIKM Sbjct: 193 QTTCIKM 199>NP_694540 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QTRCIKM 9 +T+C+KM Sbjct: 467 ETKCVKM 473>NP_001265552 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QTRCIKM 9 +T+C+KM Sbjct: 467 ETKCVKM 473>NP_001265553 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QTRCIKM 9 +T+C+KM Sbjct: 467 ETKCVKM 473>NP_004716 Length = 328 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRCI+ Sbjct: 181 QTRCIR 186>NP_001007794 Length = 326 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRCI+ Sbjct: 181 QTRCIR 186>NP_113623 Length = 228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TAQTRCIKM 9 T QTR +KM Sbjct: 65 TGQTRRLKM 73>NP_001001344 Length = 1220 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1060 TSQLKCLK 1067>NP_068768 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1060 TSQLKCLK 1067>NP_001243452 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 TAQTRC 6 TAQ RC Sbjct: 57 TAQARC 62>NP_001277197 Length = 950 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRC++ Sbjct: 125 QTRCVE 130>NP_001035947 Length = 194 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>NP_071890 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>NP_543019 Length = 946 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRC++ Sbjct: 121 QTRCVE 126>NP_001728 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 RCIKM 9 RCIKM Sbjct: 111 RCIKM 115>NP_001487 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T Q+RC++ Sbjct: 283 TEQSRCLR 290>XP_005274750 Length = 1159 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1046 TSQLKCLK 1053>XP_005274749 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1060 TSQLKCLK 1067>XP_005274748 Length = 1206 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1046 TSQLKCLK 1053>XP_005274747 Length = 1220 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1060 TSQLKCLK 1067>XP_006724886 Length = 1235 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1046 TSQLKCLK 1053>XP_005274746 Length = 1249 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 TAQTRCIK 8 T+Q +C+K Sbjct: 1060 TSQLKCLK 1067>XP_006723776 Length = 945 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRC++ Sbjct: 120 QTRCVE 125>XP_005260351 Length = 950 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 QTRC++ Sbjct: 125 QTRCVE 130>XP_006715987 Length = 170 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>XP_005250031 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 47 TKCLKM 52>XP_005250029 Length = 208 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>XP_005250028 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>XP_005250027 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 TRCIKM 9 T+C+KM Sbjct: 102 TKCLKM 107>NP_006340 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 QTRCIK 8 +TRC+K Sbjct: 146 ETRCLK 151Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.124 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 529,780 Number of extensions: 393 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |