Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 18 1135 NP_001191111 16 7355 NP_001191112 16 7355 NP_002488 16 7355 XP_005273204 16 7355 NP_001007594 15 9605 NP_001254657 15 9605 NP_004919 15 9605 NP_001258369 15 9605 NP_001258371 15 9605 NP_001258370 15 9605 NP_443204 15 9605 XP_006724116 15 9605 XP_006724115 15 9605 XP_006724114 15 9605>NP_003290 Length = 803 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 T ITLVLKE Sbjct: 245 TTITLVLKE 253>NP_001191111 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 T +TL LKE Sbjct: 118 TQLTLALKE 126>NP_001191112 Length = 384 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 T +TL LKE Sbjct: 118 TQLTLALKE 126>NP_002488 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 T +TL LKE Sbjct: 118 TQLTLALKE 126>XP_005273204 Length = 437 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 T +TL LKE Sbjct: 118 TQLTLALKE 126>NP_001007594 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 TAI L LKE Sbjct: 99 TAINLGLKE 107>NP_001254657 Length = 262 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 +AIT +LKE Sbjct: 25 SAITEILKE 33>NP_004919 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 218 TAILLLLRE 226>NP_001258369 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 217 TAILLLLRE 225>NP_001258371 Length = 214 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 176 TAILLLLRE 184>NP_001258370 Length = 375 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 337 TAILLLLRE 345>NP_443204 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TAITLVLKE 9 T TLVLKE Sbjct: 141 TLDTLVLKE 149>XP_006724116 Length = 148 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 110 TAILLLLRE 118>XP_006724115 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 242 TAILLLLRE 250>XP_006724114 Length = 281 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TAITLVLKE 9 TAI L+L+E Sbjct: 243 TAILLLLRE 251Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.130 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 348,882 Number of extensions: 380 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |