Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 NP_619542 17 4312 XP_005274600 17 4312 NP_116281 16 5631 NP_001273420 16 5631 XP_005254786 16 5631 NP_848927 15 9605 NP_001119595 15 9605 NP_066301 15 9605 NP_996999 15 9605 NP_056212 15 9605 NP_059982 15 9605 NP_974487 15 9605 XP_006716815 15 9605 XP_005251156 15 9605 XP_005251155 15 9605 XP_005251089 15 9605 XP_005251088 15 9605 NP_112217 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SVV+TESDA Sbjct: 1388 SVVITESDA 1396>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SVV+TESDA Sbjct: 1388 SVVITESDA 1396>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SVV+TESDA Sbjct: 1388 SVVITESDA 1396>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SVV+TESDA Sbjct: 1388 SVVITESDA 1396>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SVV+TESDA Sbjct: 1388 SVVITESDA 1396>NP_619542 Length = 1041 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 +VVLTE+D+ Sbjct: 1020 NVVLTENDS 1028>XP_005274600 Length = 1059 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 +VVLTE+D+ Sbjct: 1038 NVVLTENDS 1046>NP_116281 Length = 570 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVLTESD 8 ++LTESD Sbjct: 520 IILTESD 526>NP_001273420 Length = 336 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVLTESD 8 ++LTESD Sbjct: 286 IILTESD 292>XP_005254786 Length = 565 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVLTESD 8 ++LTESD Sbjct: 515 IILTESD 521>NP_848927 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SV+L++SD+ Sbjct: 521 SVILSKSDS 529>NP_001119595 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VLTESDA 9 VLTE DA Sbjct: 76 VLTEEDA 82>NP_066301 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VVLTESD 8 VVLTE D Sbjct: 346 VVLTEKD 352>NP_996999 Length = 866 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VVLTESDA 9 V+LTE D+ Sbjct: 63 VILTEDDS 70>NP_056212 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTESDA 9 VLT+SDA Sbjct: 216 VLTKSDA 222>NP_059982 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VLTESDA 9 VLTE DA Sbjct: 158 VLTEEDA 164>NP_974487 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VLTESDA 9 VLTE DA Sbjct: 179 VLTEEDA 185>XP_006716815 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLTESDA 9 VLT+SDA Sbjct: 195 VLTKSDA 201>XP_005251156 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SV+L++SD+ Sbjct: 488 SVILSKSDS 496>XP_005251155 Length = 560 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SVVLTESDA 9 SV+L++SD+ Sbjct: 499 SVILSKSDS 507>XP_005251089 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VVLTESD 8 VVLTE D Sbjct: 444 VVLTEKD 450>XP_005251088 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VVLTESD 8 VVLTE D Sbjct: 444 VVLTEKD 450>NP_112217 Length = 1594 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VLTESDA 9 VLTE DA Sbjct: 1284 VLTEEDA 1290Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.110 0.246 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 433,174 Number of extensions: 577 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |