Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 665 XP_005262424 19 665 NP_001020029 17 3301 NP_055256 17 3301 NP_055200 17 3301 NP_000338 17 3301 NP_001185487 17 3301 XP_006723209 17 3301 XP_006723203 17 3301 XP_006720304 17 3301 XP_005268080 17 3301 NP_149078 16 5631 NP_005268 16 7355 NP_963885 16 7355 NP_001248377 16 7355 NP_001248376 16 7355 NP_963886 16 7355 XP_006714246 16 7355 NP_001136272 15 9605 NP_660341 15 9605 NP_001138498 15 9605 NP_001185744 15 9605 NP_055323 15 9605 NP_976031 15 9605 XP_005275558 15 9605 XP_005275391 15 9605 XP_005275259 15 9605 XP_005274965 15 9605 XP_005272815 15 9605 XP_005274885 15 9605 XP_005261394 15 9605 XP_005261392 15 9605 XP_005248836 15 9605 NP_689639 15 9605>NP_722576 Length = 3080 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNVTAFTS 9 VNVTAFTS Sbjct: 1518 VNVTAFTS 1525>XP_005262424 Length = 2875 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNVTAFTS 9 VNVTAFTS Sbjct: 1313 VNVTAFTS 1320>NP_001020029 Length = 2328 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 VNVT FTS Sbjct: 193 VNVTNFTS 200>NP_055256 Length = 463 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SVNVTA T Sbjct: 136 SVNVTALT 143>NP_055200 Length = 467 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SVNVTA T Sbjct: 140 SVNVTALT 147>NP_000338 Length = 2137 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 VNVT FTS Sbjct: 193 VNVTNFTS 200>NP_001185487 Length = 479 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SVNVTA T Sbjct: 136 SVNVTALT 143>XP_006723209 Length = 481 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SVNVTA T Sbjct: 136 SVNVTALT 143>XP_006723203 Length = 343 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SVNVTA T Sbjct: 140 SVNVTALT 147>XP_006720304 Length = 2328 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 VNVT FTS Sbjct: 193 VNVTNFTS 200>XP_005268080 Length = 2328 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 VNVT FTS Sbjct: 193 VNVTNFTS 200>NP_149078 Length = 416 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 S+NVT+F S Sbjct: 202 SLNVTSFDS 210>NP_005268 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 142 LGVTAFTS 149>NP_963885 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 142 LGVTAFTS 149>NP_001248377 Length = 271 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 135 LGVTAFTS 142>NP_001248376 Length = 243 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 107 LGVTAFTS 114>NP_963886 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 131 LGVTAFTS 138>XP_006714246 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VNVTAFTS 9 + VTAFTS Sbjct: 79 LGVTAFTS 86>NP_001136272 Length = 3144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S+N AFT Sbjct: 2230 SINTNAFT 2237>NP_660341 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 +VN+T FT+ Sbjct: 296 NVNLTIFTA 304>NP_001138498 Length = 2299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SVNVTAFT 8 SV +TAFT Sbjct: 1609 SVVITAFT 1616>NP_001185744 Length = 1773 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 25 SENTTAFT 32>NP_055323 Length = 190 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 +VN+T FT+ Sbjct: 113 NVNLTIFTA 121>NP_976031 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VNVTAF 7 VN+TAF Sbjct: 331 VNITAF 336>XP_005275558 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005275391 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005275259 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005274965 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005272815 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005274885 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>XP_005261394 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 +VN+T FT+ Sbjct: 125 NVNLTIFTA 133>XP_005261392 Length = 217 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 +VN+T FT+ Sbjct: 113 NVNLTIFTA 121>XP_005248836 Length = 1776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SVNVTAFT 8 S N TAFT Sbjct: 28 SENTTAFT 35>NP_689639 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVNVTAFTS 9 +VN+T FT+ Sbjct: 309 NVNLTIFTA 317Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.109 0.266 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 320,300 Number of extensions: 553 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |