Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 19 869 NP_004561 19 869 NP_001275703 19 869 XP_005253450 19 869 XP_006719151 19 869 NP_112224 17 4312 NP_689914 17 4312 XP_005253212 17 4312 XP_005253211 17 4312 NP_751945 16 5631 NP_001029288 16 5631 NP_056451 16 5631 XP_006712195 16 5631 XP_005264689 16 5631 NP_065433 16 7355 NP_001123380 16 7355 NP_065749 16 7355 NP_001014980 16 7355 XP_005269098 16 7355 XP_005269097 16 7355 XP_005269096 16 7355 NP_775184 15 9605 NP_115785 15 9605 NP_004804 15 9605 NP_476515 15 9605 NP_002159 15 9605 NP_001269316 15 9605 NP_001277043 15 9605 NP_005887 15 9605 NP_001269315 15 9605 NP_001276839 15 9605 NP_071942 15 9605 NP_115945 15 9605 NP_699197 15 9605 NP_001004485 15 9605>NP_001275701 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVLVCVETK 9 SVL CVETK Sbjct: 439 SVLGCVETK 447>NP_004561 Length = 1445 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVLVCVETK 9 SVL CVETK Sbjct: 439 SVLGCVETK 447>NP_001275703 Length = 1264 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVLVCVETK 9 SVL CVETK Sbjct: 217 SVLGCVETK 225>XP_005253450 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVLVCVETK 9 SVL CVETK Sbjct: 439 SVLGCVETK 447>XP_006719151 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVLVCVETK 9 SVL CVETK Sbjct: 439 SVLGCVETK 447>NP_112224 Length = 1849 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SVLVCVE 7 SVLVC+E Sbjct: 1405 SVLVCLE 1411>NP_689914 Length = 5058 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VLVCVET 8 VL+C+ET Sbjct: 465 VLICLET 471>XP_005253212 Length = 1838 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SVLVCVE 7 SVLVC+E Sbjct: 1394 SVLVCLE 1400>XP_005253211 Length = 1881 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SVLVCVE 7 SVLVC+E Sbjct: 1437 SVLVCLE 1443>NP_751945 Length = 543 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 VLVC ET Sbjct: 454 VLVCCET 460>NP_001029288 Length = 523 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 VLVC ET Sbjct: 434 VLVCCET 440>NP_056451 Length = 522 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 VLVC ET Sbjct: 433 VLVCCET 439>XP_006712195 Length = 507 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 VLVC ET Sbjct: 418 VLVCCET 424>XP_005264689 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 VLVC ET Sbjct: 419 VLVCCET 425>NP_065433 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VLVCVET 8 +LVC+E+ Sbjct: 94 ILVCIES 100>NP_001123380 Length = 575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SVLVCVE 7 S+LVC E Sbjct: 87 SILVCAE 93>NP_065749 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 +LVCV T Sbjct: 425 ILVCVST 431>NP_001014980 Length = 302 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VLVCVET 8 VL+C+E+ Sbjct: 232 VLICIES 238>XP_005269098 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 +LVCV T Sbjct: 394 ILVCVST 400>XP_005269097 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 +LVCV T Sbjct: 394 ILVCVST 400>XP_005269096 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VLVCVET 8 +LVCV T Sbjct: 394 ILVCVST 400>NP_775184 Length = 152 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LVCVETK 9 L CVET+ Sbjct: 68 LACVETE 74>NP_115785 Length = 581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 CVETK 9 CVETK Sbjct: 549 CVETK 553>NP_004804 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SVLVCVE 7 SVL CVE Sbjct: 87 SVLECVE 93>NP_476515 Length = 346 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SVLVCVE 7 SVL CVE Sbjct: 87 SVLECVE 93>NP_002159 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 332 SVLVCPDGK 340>NP_001269316 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 293 SVLVCPDGK 301>NP_001277043 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 202 SVLVCPDGK 210>NP_005887 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 293 SVLVCPDGK 301>NP_001269315 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 293 SVLVCPDGK 301>NP_001276839 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SVLVCVETK 9 SVLVC + K Sbjct: 280 SVLVCPDGK 288>NP_071942 Length = 173 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLVCVETK 9 VLV VETK Sbjct: 86 VLVDVETK 93>NP_115945 Length = 152 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 LVCVETK 9 L CVET+ Sbjct: 68 LACVETE 74>NP_699197 Length = 3571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 SVLVCVET 8 S L C+ET Sbjct: 2534 SALTCLET 2541>NP_001004485 Length = 319 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LVCVET 8 LVCV+T Sbjct: 187 LVCVDT 192Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 636,061 Number of extensions: 813 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |