Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 18 1482 NP_001275716 17 2528 NP_001275715 17 2528 NP_001275717 17 2528 NP_001275718 17 2528 NP_001076437 17 2528 NP_001028723 17 2528 XP_005256523 17 2528 XP_005256520 17 2528 XP_005256519 17 2528 XP_006721515 17 2528 XP_005256518 17 2528 NP_001138356 16 5631 NP_598003 16 5631 NP_003103 16 5631 NP_001243549 16 5631 XP_006717832 16 5631 XP_006717831 16 5631 XP_005249886 16 5631 XP_005249885 16 5631 XP_005270560 16 5631 NP_612478 16 5631 NP_055287 16 5631 NP_001243548 16 5631 NP_005718 16 7355 NP_003740 16 7355 NP_937792 16 7355 NP_061869 15 9605 NP_001136112 15 9605 NP_001139447 15 9605 NP_003975 15 9605 NP_055325 15 9605 NP_149015 15 9605 NP_055529 15 9605 NP_060697 15 9605 XP_006722228 15 9605 XP_006722063 15 9605 XP_006722061 15 9605 XP_005257605 15 9605 XP_005257604 15 9605 XP_006722059 15 9605 XP_005255783 15 9605 XP_005255782 15 9605 XP_006721054 15 9605 XP_006721053 15 9605 XP_006721052 15 9605 XP_006715989 15 9605 XP_006714316 15 9605>NP_005350 Length = 552 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 SVGGIA AI Sbjct: 474 SVGGIAPAI 482>NP_001275716 Length = 462 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 364 AVGGLASAL 372>NP_001275715 Length = 483 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 356 AVGGLASAL 364>NP_001275717 Length = 389 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 311 AVGGLASAL 319>NP_001275718 Length = 388 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 261 AVGGLASAL 269>NP_001076437 Length = 507 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 409 AVGGLASAL 417>NP_001028723 Length = 457 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 359 AVGGLASAL 367>XP_005256523 Length = 438 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 311 AVGGLASAL 319>XP_005256520 Length = 487 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 409 AVGGLASAL 417>XP_005256519 Length = 491 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 364 AVGGLASAL 372>XP_006721515 Length = 503 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 376 AVGGLASAL 384>XP_005256518 Length = 536 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SVGGIASAI 9 +VGG+ASA+ Sbjct: 409 AVGGLASAL 417>NP_001138356 Length = 376 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 S+G IASAI Sbjct: 248 SIGVIASAI 256>NP_598003 Length = 376 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 S+G IASAI Sbjct: 248 SIGVIASAI 256>NP_003103 Length = 784 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 +VGGIA+A Sbjct: 581 AVGGIANA 588>NP_001243549 Length = 778 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>XP_006717832 Length = 778 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>XP_006717831 Length = 778 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>XP_005249886 Length = 706 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 +VGGIA+A Sbjct: 581 AVGGIANA 588>XP_005249885 Length = 767 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 +VGGIA+A Sbjct: 564 AVGGIANA 571>XP_005270560 Length = 376 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 S+G IASAI Sbjct: 248 SIGVIASAI 256>NP_612478 Length = 778 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>NP_055287 Length = 778 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>NP_001243548 Length = 792 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SVGGIASA 8 SVGGIA++ Sbjct: 288 SVGGIANS 295>NP_005718 Length = 241 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 +VGG+A+ I Sbjct: 214 TVGGVAAGI 222>NP_003740 Length = 1338 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 S+GG+ SA+ Sbjct: 1289 SLGGLISAV 1297>NP_937792 Length = 197 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++ GIASA+ Sbjct: 85 TIAGIASAV 93>NP_061869 Length = 1690 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1052 ALGGIASGL 1060>NP_001136112 Length = 1726 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1049 ALGGIASGL 1057>NP_001139447 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGIA+ Sbjct: 279 SIGGIAT 285>NP_003975 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGIA+ Sbjct: 230 SIGGIAT 236>NP_055325 Length = 4935 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGI+S Sbjct: 4226 SIGGISS 4232>NP_149015 Length = 5142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGI+S Sbjct: 4226 SIGGISS 4232>NP_055529 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>NP_060697 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 +VGG+AS Sbjct: 393 AVGGVAS 399>XP_006722228 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGIA+ Sbjct: 186 SIGGIAT 192>XP_006722063 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1285 ALGGIASGL 1293>XP_006722061 Length = 1913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1288 ALGGIASGL 1296>XP_005257605 Length = 1926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1288 ALGGIASGL 1296>XP_005257604 Length = 1962 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1285 ALGGIASGL 1293>XP_006722059 Length = 1965 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVGGIASAI 9 ++GGIAS + Sbjct: 1288 ALGGIASGL 1296>XP_005255783 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>XP_005255782 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721054 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721053 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>XP_006721052 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VGGIAS 7 VGGIAS Sbjct: 569 VGGIAS 574>XP_006715989 Length = 5148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 S+GGI+S Sbjct: 4226 SIGGISS 4232>XP_006714316 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SVGGIAS 7 +VGG+AS Sbjct: 318 AVGGVAS 324Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.130 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 374,281 Number of extensions: 465 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |