Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 20 509 XP_006714302 17 2528 XP_005263127 17 2528 NP_061908 17 2528 NP_001128360 17 3301 NP_004550 16 5631 NP_056162 16 5631 NP_001138898 16 5631 NP_056460 16 5631 NP_689860 16 5631 NP_001265360 16 5631 NP_003642 16 5631 XP_005254276 16 5631 XP_005254275 16 5631 XP_006720491 16 5631 XP_006720490 16 5631 XP_006720489 16 5631 XP_006720488 16 5631 XP_005254273 16 5631 XP_006720487 16 5631 XP_005254272 16 5631 XP_006720486 16 5631 XP_005254271 16 5631 XP_005254270 16 5631 NP_057066 16 5631 NP_001449 16 7355 NP_001120959 16 7355 NP_705838 16 7355 NP_775099 16 7355 NP_056472 16 7355 NP_002544 16 7355 XP_006715973 16 7355 NP_073619 15 9605 NP_005727 15 9605 NP_689801 15 9605 XP_005268737 15 9605 XP_006719250 15 9605>NP_004251 Length = 1208 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 SVEFD+VKL Sbjct: 984 SVEFDMVKL 992>XP_006714302 Length = 916 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVEFDIVKL 9 S+EFD++ L Sbjct: 105 SIEFDVITL 113>XP_005263127 Length = 1134 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVEFDIVKL 9 S+EFD++ L Sbjct: 105 SIEFDVITL 113>NP_061908 Length = 1135 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVEFDIVKL 9 S+EFD++ L Sbjct: 105 SIEFDVITL 113>NP_001128360 Length = 1358 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SVEFDIV 7 S+EFDIV Sbjct: 489 SIEFDIV 495>NP_004550 Length = 324 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 +VEFD+V+ Sbjct: 108 TVEFDVVE 115>NP_056162 Length = 1052 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EFDIVK 8 EFDIVK Sbjct: 428 EFDIVK 433>NP_001138898 Length = 303 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 +VEFD+V+ Sbjct: 140 TVEFDVVE 147>NP_056460 Length = 243 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 S++FD+VK Sbjct: 163 SLQFDLVK 170>NP_689860 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>NP_001265360 Length = 243 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 S++FD+VK Sbjct: 163 SLQFDLVK 170>NP_003642 Length = 372 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 +VEFD+V+ Sbjct: 140 TVEFDVVE 147>XP_005254276 Length = 380 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>XP_005254275 Length = 399 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 204 SIDFNIIKI 212>XP_006720491 Length = 433 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 238 SIDFNIIKI 246>XP_006720490 Length = 450 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 255 SIDFNIIKI 263>XP_006720489 Length = 486 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 291 SIDFNIIKI 299>XP_006720488 Length = 492 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>XP_005254273 Length = 499 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 304 SIDFNIIKI 312>XP_006720487 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>XP_005254272 Length = 521 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 326 SIDFNIIKI 334>XP_006720486 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>XP_005254271 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>XP_005254270 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SVEFDIVKL 9 S++F+I+K+ Sbjct: 338 SIDFNIIKI 346>NP_057066 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SVEFDIVK 8 +VEFD+V+ Sbjct: 143 TVEFDVVE 150>NP_001449 Length = 2725 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VEFDIVK 8 ++FDI+K Sbjct: 817 IDFDIIK 823>NP_001120959 Length = 2692 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VEFDIVK 8 ++FDI+K Sbjct: 817 IDFDIIK 823>NP_705838 Length = 4069 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 EFDIVKL 9 E+D+VKL Sbjct: 3105 EYDLVKL 3111>NP_775099 Length = 2595 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVEFDIVKL 9 + EFD+V+L Sbjct: 2248 AAEFDLVQL 2256>NP_056472 Length = 2277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SVEFDIVKL 9 + EFD+V+L Sbjct: 1930 AAEFDLVQL 1938>NP_002544 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SVEFDIVK 8 +V FDI+K Sbjct: 422 TVNFDIIK 429>XP_006715973 Length = 2632 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VEFDIVK 8 ++FDI+K Sbjct: 817 IDFDIIK 823>NP_073619 Length = 1183 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 EFDIVK 8 EFD+VK Sbjct: 3 EFDLVK 8>NP_005727 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SVEFDIVK 8 S EF+IVK Sbjct: 208 SSEFEIVK 215>NP_689801 Length = 836 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SVEFDIV 7 S EFD+V Sbjct: 742 STEFDVV 748>XP_005268737 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SVEFDIV 7 S EFD+V Sbjct: 625 STEFDVV 631>XP_006719250 Length = 1141 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 EFDIVK 8 EFD+VK Sbjct: 3 EFDLVK 8Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.146 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 379,444 Number of extensions: 449 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |