Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 NP_061136 16 5631 XP_005276776 16 5631 XP_005262564 16 5631 XP_006724827 16 5631 XP_006710324 16 5631 NP_079010 16 7355 XP_006720319 16 7355>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 S AMSTQDQ Sbjct: 2268 SDAMSTQDQ 2276>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 S AMSTQDQ Sbjct: 2260 SDAMSTQDQ 2268>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 S AMSTQDQ Sbjct: 2221 SDAMSTQDQ 2229>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 S AMSTQDQ Sbjct: 2300 SDAMSTQDQ 2308>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 S AMSTQDQ Sbjct: 2313 SDAMSTQDQ 2321>NP_061136 Length = 904 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 380 AMSTRDQ 386Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 568 AMSTRDQ 574>XP_005276776 Length = 991 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 862 AMSTRDQ 868>XP_005262564 Length = 991 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 862 AMSTRDQ 868>XP_006724827 Length = 904 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 380 AMSTRDQ 386Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 568 AMSTRDQ 574>XP_006710324 Length = 943 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMSTQDQ 9 AMST+DQ Sbjct: 814 AMSTRDQ 820>NP_079010 Length = 1002 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 SVA+S +DQ Sbjct: 178 SVAISVKDQ 186>XP_006720319 Length = 1004 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SVAMSTQDQ 9 SVA+S +DQ Sbjct: 178 SVAISVKDQ 186Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.0979 0.219 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 298,706 Number of extensions: 248 Number of successful extensions: 14 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |