Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_909119 18 1482 NP_057537 18 1482 NP_722576 18 1482 XP_005262424 18 1482 XP_005265280 18 1482 XP_006713268 18 1482 NP_001243668 18 1935 NP_001243667 18 1935 NP_001243666 18 1935 NP_076939 18 1935 NP_001243669 18 1935 NP_060842 17 4312 NP_001006946 17 4312 XP_005271086 17 4312 NP_056240 16 5631 XP_006712046 16 5631 NP_009107 16 7355 NP_055178 16 7355 NP_001264984 16 7355 NP_115800 16 7355 XP_005266395 16 7355 XP_005271758 16 7355 XP_005271756 16 7355 XP_005271757 16 7355 XP_005271755 16 7355 XP_005271754 16 7355 NP_079110 15 9605 NP_001243307 15 9605 NP_000848 15 9605 NP_001243308 15 9605 NP_001035502 15 9605 NP_001035501 15 9605 NP_004361 15 9605 NP_079105 15 9605 NP_976044 15 9605 NP_001274320 15 9605 NP_001035500 15 9605 XP_006715397 15 9605>NP_909119 Length = 715 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 STL+SSV+P Sbjct: 469 STLVSSVLP 477>NP_057537 Length = 722 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 STL+SSV+P Sbjct: 476 STLVSSVLP 484>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 STLLSSV P Sbjct: 1589 STLLSSVTP 1597>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 STLLSSV P Sbjct: 1384 STLLSSVTP 1392>XP_005265280 Length = 644 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 STL+SSV+P Sbjct: 398 STLVSSVLP 406>XP_006713268 Length = 695 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 STL+SSV+P Sbjct: 476 STLVSSVLP 484>NP_001243668 Length = 309 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 +TLLS+VIP Sbjct: 262 TTLLSAVIP 270>NP_001243667 Length = 278 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 +TLLS+VIP Sbjct: 231 TTLLSAVIP 239>NP_001243666 Length = 386 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 +TLLS+VIP Sbjct: 339 TTLLSAVIP 347>NP_076939 Length = 367 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 +TLLS+VIP Sbjct: 320 TTLLSAVIP 328>NP_001243669 Length = 296 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 +TLLS+VIP Sbjct: 249 TTLLSAVIP 257>NP_060842 Length = 769 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 S LLSS++P Sbjct: 663 SQLLSSILP 671>NP_001006946 Length = 233 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 S LLSS++P Sbjct: 127 SQLLSSILP 135>XP_005271086 Length = 768 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 S LLSS++P Sbjct: 662 SQLLSSILP 670>NP_056240 Length = 1720 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 STLL ++IP Sbjct: 689 STLLINIIP 697>XP_006712046 Length = 1612 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STLLSSVIP 9 STLL ++IP Sbjct: 581 STLLINIIP 589>NP_009107 Length = 140 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 TLLSSVI 8 TLLSSVI Sbjct: 57 TLLSSVI 63>NP_055178 Length = 4579 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 LLSSV+P Sbjct: 3217 LLSSVLP 3223>NP_001264984 Length = 4432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 LLSSV+P Sbjct: 3070 LLSSVLP 3076>NP_115800 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005266395 Length = 4588 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 LLSSV+P Sbjct: 3226 LLSSVLP 3232>XP_005271758 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271756 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271757 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271755 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271754 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLSSVIP 9 +LSSVIP Sbjct: 163 MLSSVIP 169>NP_079110 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 ++LLS+V+P Sbjct: 537 NSLLSAVLP 545>NP_001243307 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 ++LLS+V+P Sbjct: 535 NSLLSAVLP 543>NP_000848 Length = 619 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TLLSSVIP 9 TLL SV+P Sbjct: 392 TLLYSVLP 399>NP_001243308 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 STLLSSVIP 9 ++LLS+V+P Sbjct: 362 NSLLSAVLP 370>NP_001035502 Length = 1031 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STLLSSVIP 9 S +LSS IP Sbjct: 764 SPILSSTIP 772>NP_001035501 Length = 1006 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STLLSSVIP 9 S +LSS IP Sbjct: 739 SPILSSTIP 747>NP_004361 Length = 3063 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLLSSVIP 9 TLLS ++P Sbjct: 79 TLLSELVP 86>NP_079105 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TLLSSVIP 9 TLL VIP Sbjct: 310 TLLKQVIP 317>NP_976044 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STLLSSVIP 9 S +LSS IP Sbjct: 812 SPILSSTIP 820>NP_001274320 Length = 1006 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STLLSSVIP 9 S +LSS IP Sbjct: 739 SPILSSTIP 747>NP_001035500 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STLLSSVIP 9 S +LSS IP Sbjct: 777 SPILSSTIP 785>XP_006715397 Length = 2972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLLSSVIP 9 TLLS ++P Sbjct: 79 TLLSELVP 86Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.123 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 336,614 Number of extensions: 571 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |