Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 509 NP_055585 17 3301 NP_001116244 17 3301 XP_005268683 17 3301 XP_005268682 17 3301 NP_055464 16 5631 NP_065694 16 5631 XP_005259745 16 5631 NP_777576 16 7355 NP_872393 16 7355 XP_006712515 16 7355 XP_006712514 16 7355 XP_006712513 16 7355 XP_006712512 16 7355 XP_006712511 16 7355 XP_006712510 16 7355 XP_006712509 16 7355 XP_005246533 16 7355 XP_006712508 16 7355 NP_115893 16 7355 NP_065955 15 9605 NP_001154826 15 9605 NP_061027 15 9605 XP_006723364 15 9605 XP_005259166 15 9605 XP_005259165 15 9605 XP_005259164 15 9605>NP_002430 Length = 1137 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 STKAVSRLH 9 STKAVSR H Sbjct: 773 STKAVSRFH 781>NP_055585 Length = 836 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 STKAVSRLH 9 S +AVSRLH Sbjct: 150 SFQAVSRLH 158>NP_001116244 Length = 1192 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 STKAVSRLH 9 S +AVSRLH Sbjct: 486 SFQAVSRLH 494>XP_005268683 Length = 856 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 STKAVSRLH 9 S +AVSRLH Sbjct: 150 SFQAVSRLH 158>XP_005268682 Length = 1172 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 STKAVSRLH 9 S +AVSRLH Sbjct: 486 SFQAVSRLH 494>NP_055464 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 +TK +S LH Sbjct: 461 ATKCISHLH 469>NP_065694 Length = 467 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 KAVSRLH 9 KAV RLH Sbjct: 220 KAVERLH 226>XP_005259745 Length = 499 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 +TK +S LH Sbjct: 7 ATKCISHLH 15>NP_777576 Length = 1749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVSRLH 9 AVSRLH Sbjct: 627 AVSRLH 632>NP_872393 Length = 3234 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1714 SARAVSRSH 1722>XP_006712515 Length = 3232 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1712 SARAVSRSH 1720>XP_006712514 Length = 2496 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1785 SARAVSRSH 1793>XP_006712513 Length = 3220 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1681 SARAVSRSH 1689>XP_006712512 Length = 3237 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1717 SARAVSRSH 1725>XP_006712511 Length = 3256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1717 SARAVSRSH 1725>XP_006712510 Length = 3305 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1785 SARAVSRSH 1793>XP_006712509 Length = 3319 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1780 SARAVSRSH 1788>XP_005246533 Length = 3323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1785 SARAVSRSH 1793>XP_006712508 Length = 3324 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1785 SARAVSRSH 1793>NP_115893 Length = 3258 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STKAVSRLH 9 S +AVSR H Sbjct: 1719 SARAVSRSH 1727>NP_065955 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38>NP_001154826 Length = 583 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38>NP_061027 Length = 4599 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TKAVSRLH 9 TK++SR H Sbjct: 3234 TKSLSRAH 3241>XP_006723364 Length = 637 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38>XP_005259166 Length = 595 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38>XP_005259165 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38>XP_005259164 Length = 754 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TKAVSRLH 9 T+AV+++H Sbjct: 31 TRAVNKIH 38Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.113 0.286 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 305,705 Number of extensions: 341 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |