Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_009052 18 1135 NP_001243576 18 1135 NP_005684 16 5631 NP_001238863 16 5631 NP_001238864 16 5631 NP_001123574 16 5631 XP_006718179 16 5631 XP_005252773 16 5631 XP_005252772 16 5631 XP_005252767 16 5631 XP_005252766 16 5631 XP_006718178 16 5631 XP_006718177 16 5631 XP_005252764 16 5631 XP_005252763 16 5631 XP_006718176 16 5631 XP_006718175 16 5631 XP_005252762 16 5631 NP_848622 15 9605 NP_056494 15 9605>NP_009052 Length = 461 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 STIEIMLLK 9 STIEIMLL+ Sbjct: 307 STIEIMLLE 315>NP_001243576 Length = 364 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 STIEIMLLK 9 STIEIMLL+ Sbjct: 210 STIEIMLLE 218>NP_005684 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>NP_001238863 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 299 SAIEVMLLE 307>NP_001238864 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 299 SAIEVMLLE 307>NP_001123574 Length = 402 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 248 SAIEVMLLE 256>XP_006718179 Length = 402 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 248 SAIEVMLLE 256>XP_005252773 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 159 SAIEVMLLE 167>XP_005252772 Length = 358 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 204 SAIEVMLLE 212>XP_005252767 Length = 402 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 248 SAIEVMLLE 256>XP_005252766 Length = 402 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 248 SAIEVMLLE 256>XP_006718178 Length = 402 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 248 SAIEVMLLE 256>XP_006718177 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>XP_005252764 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>XP_005252763 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>XP_006718176 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>XP_006718175 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>XP_005252762 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STIEIMLLK 9 S IE+MLL+ Sbjct: 293 SAIEVMLLE 301>NP_848622 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 STIEIMLLK 9 ST++I++LK Sbjct: 655 STLKIIILK 663>NP_056494 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIEIMLLK 9 T+E+ LLK Sbjct: 29 TVELQLLK 36Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.138 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 282,049 Number of extensions: 454 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |