Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_065702 18 1482 XP_005267947 18 1482 XP_006720274 18 1482 XP_005264494 18 1482 XP_005264493 18 1482 NP_067078 18 1482 NP_001124320 17 3301 NP_004901 17 3301 NP_001243372 17 4312 NP_001243371 17 4312 NP_660282 17 4312 XP_006721069 17 4312 NP_006452 16 5631 NP_006826 16 5631 NP_998761 16 5631 NP_001363 16 5631 XP_006721528 16 5631 NP_004653 16 5631 NP_055918 16 7355 NP_005303 16 7355 NP_941372 16 7355 XP_005272252 16 7355 XP_006717137 16 7355 XP_006717136 16 7355 XP_005272248 16 7355 XP_006717135 16 7355 XP_006717134 16 7355 XP_006717133 16 7355 XP_006717132 16 7355 XP_005272243 16 7355 XP_005272242 16 7355 XP_006717131 16 7355 XP_006717130 16 7355 NP_009036 16 7355 NP_878908 15 9605 NP_001005853 15 9605 NP_877398 15 9605 NP_056007 15 9605 NP_055969 15 9605 NP_006043 15 9605 XP_006726924 15 9605 XP_005260968 15 9605 XP_005260966 15 9605 XP_005260738 15 9605 XP_006723618 15 9605 XP_005247061 15 9605 NP_775486 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 STAAPVD V Sbjct: 475 STAAPVDSV 483>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 STAAPVD V Sbjct: 270 STAAPVDSV 278>NP_065702 Length = 418 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 105 STESPIDFV 113>XP_005267947 Length = 247 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 107 STESPIDFV 115>XP_006720274 Length = 320 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 7 STESPIDFV 15>XP_005264494 Length = 320 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 7 STESPIDFV 15>XP_005264493 Length = 352 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 39 STESPIDFV 47>NP_067078 Length = 420 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 ST +P+DFV Sbjct: 107 STESPIDFV 115>NP_001124320 Length = 1243 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AAPVDFV 9 AAPVDF+ Sbjct: 1194 AAPVDFL 1200>NP_004901 Length = 1244 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AAPVDFV 9 AAPVDF+ Sbjct: 1195 AAPVDFL 1201>NP_001243372 Length = 299 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 STAAPVD 7 +TAAPVD Sbjct: 54 TTAAPVD 60>NP_001243371 Length = 394 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 STAAPVD 7 +TAAPVD Sbjct: 54 TTAAPVD 60>NP_660282 Length = 340 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 STAAPVD 7 +TAAPVD Sbjct: 54 TTAAPVD 60>XP_006721069 Length = 340 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 STAAPVD 7 +TAAPVD Sbjct: 54 TTAAPVD 60>NP_006452 Length = 1193 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 STAAPVDFV 9 + ++PVDFV Sbjct: 63 NNSSPVDFV 71>NP_006826 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 TA P+DF+ Sbjct: 144 TATPLDFL 151>NP_998761 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 APVDFV 9 APVDF+ Sbjct: 403 APVDFI 408>NP_001363 Length = 4486 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 TA+PV+F+ Sbjct: 3786 TASPVEFL 3793>XP_006721528 Length = 3869 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 TA+PV+F+ Sbjct: 3786 TASPVEFL 3793>NP_004653 Length = 798 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 TA+PV+F+ Sbjct: 98 TASPVEFL 105>NP_055918 Length = 1925 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 STAAPVDF 8 + +APVDF Sbjct: 1132 NASAPVDF 1139>NP_005303 Length = 1077 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 518 SSAPVEFV 525>NP_941372 Length = 1095 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 536 SSAPVEFV 543>XP_005272252 Length = 1094 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 535 SSAPVEFV 542>XP_006717137 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>XP_006717136 Length = 1200 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 503 SSAPVEFV 510>XP_005272248 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 497 SSAPVEFV 504>XP_006717135 Length = 1232 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 503 SSAPVEFV 510>XP_006717134 Length = 1238 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>XP_006717133 Length = 1239 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>XP_006717132 Length = 1254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>XP_005272243 Length = 1264 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 535 SSAPVEFV 542>XP_005272242 Length = 1265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 536 SSAPVEFV 543>XP_006717131 Length = 1269 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>XP_006717130 Length = 1270 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TAAPVDFV 9 ++APV+FV Sbjct: 541 SSAPVEFV 548>NP_009036 Length = 253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 T AP+DF+ Sbjct: 26 TLAPLDFL 33>NP_878908 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 STAAPV 6 STAAPV Sbjct: 326 STAAPV 331>NP_001005853 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STAAPVDFV 9 STA VDF+ Sbjct: 193 STAELVDFI 201>NP_877398 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 T +PV+FV Sbjct: 580 TKSPVEFV 587>NP_056007 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 T +PV+FV Sbjct: 580 TKSPVEFV 587>NP_055969 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AAPVDF 8 +APVDF Sbjct: 88 SAPVDF 93>NP_006043 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TAAPVDF 8 T +PVDF Sbjct: 151 TPSPVDF 157>XP_006726924 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 STAAPV 6 STAAPV Sbjct: 312 STAAPV 317>XP_005260968 Length = 172 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TAAPVDF 8 T +PVDF Sbjct: 26 TPSPVDF 32>XP_005260966 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TAAPVDF 8 T +PVDF Sbjct: 124 TPSPVDF 130>XP_005260738 Length = 877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 T +PV+FV Sbjct: 580 TKSPVEFV 587>XP_006723618 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TAAPVDFV 9 T +PV+FV Sbjct: 580 TKSPVEFV 587>XP_005247061 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STAAPVDFV 9 STA VDF+ Sbjct: 193 STAELVDFI 201>NP_775486 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 STAAPVDFV 9 STA VDF+ Sbjct: 193 STAELVDFI 201Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.126 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 580,427 Number of extensions: 407 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |