Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 20 299 XP_006713721 20 299 NP_001004735 17 3301 XP_005262424 17 4312 NP_115495 16 5631 NP_054815 16 5631 NP_001265135 16 5631 NP_001265130 16 5631 NP_060081 16 5631 NP_955361 16 5631 NP_001005198 16 7355 NP_001074924 16 7355 NP_722576 16 7355 XP_006723106 16 7355 XP_006723105 16 7355 XP_006713895 16 7355 XP_005247980 16 7355 XP_005247979 16 7355 XP_005247978 16 7355 NP_604393 16 7355 NP_055694 16 7355 NP_036474 16 7355 NP_001243506 15 9605 NP_078930 15 9605 NP_789787 15 9605 NP_001160006 15 9605 NP_001160005 15 9605 XP_005248604 15 9605 XP_005248602 15 9605 NP_001136021 15 9605 NP_077726 15 9605>NP_006209 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSYIFISVT 9 SSYIF+SVT Sbjct: 66 SSYIFVSVT 74>XP_006713721 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSYIFISVT 9 SSYIF+SVT Sbjct: 66 SSYIFVSVT 74>NP_001004735 Length = 314 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSYIFISVT 9 +SY+FI VT Sbjct: 218 TSYVFIFVT 226>XP_005262424 Length = 2875 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 SS+IF+SV Sbjct: 17 SSFIFLSV 24>NP_115495 Length = 6306 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YIFISVT 9 YIFI++T Sbjct: 1787 YIFINIT 1793>NP_054815 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 +S+IFISV Sbjct: 188 ASFIFISV 195>NP_001265135 Length = 504 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 +S+IFISV Sbjct: 201 ASFIFISV 208>NP_001265130 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 +S+IFISV Sbjct: 188 ASFIFISV 195>NP_060081 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 +S+IFISV Sbjct: 188 ASFIFISV 195>NP_955361 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 +S+IFISV Sbjct: 188 ASFIFISV 195>NP_001005198 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SSYIFI 6 SSYIFI Sbjct: 251 SSYIFI 256>NP_001074924 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>NP_722576 Length = 3080 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSYIFISVT 9 SS+IF+S T Sbjct: 17 SSFIFLSDT 25>XP_006723106 Length = 971 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSYIFISV 8 SSY+F+ V Sbjct: 480 SSYVFLHV 487>XP_006723105 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSYIFISV 8 SSY+F+ V Sbjct: 480 SSYVFLHV 487>XP_006713895 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>XP_005247980 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>XP_005247979 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>XP_005247978 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>NP_604393 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSYIFISV 8 SSY+F+ V Sbjct: 446 SSYVFLHV 453>NP_055694 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+YIF+++ Sbjct: 187 SNYIFVAI 194>NP_036474 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SSYIFI 6 SSYIFI Sbjct: 5 SSYIFI 10>NP_001243506 Length = 216 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SSYIFIS 7 S+Y+F+S Sbjct: 180 STYVFVS 186>NP_078930 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SSYIFI 6 SSYIF+ Sbjct: 241 SSYIFV 246>NP_789787 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+++FISV Sbjct: 16 STFLFISV 23>NP_001160006 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 349 SNYLFVAV 356>NP_001160005 Length = 704 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 478 SNYLFVAV 485>XP_005248604 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 440 SNYLFVAV 447>XP_005248602 Length = 700 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 474 SNYLFVAV 481>NP_001136021 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 464 SNYLFVAV 471>NP_077726 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SSYIFISV 8 S+Y+F++V Sbjct: 498 SNYLFVAV 505Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.133 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 399,737 Number of extensions: 560 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |