Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 18 1135 NP_001230526 17 4312 NP_058648 17 4312 NP_001082 17 4312 NP_001259001 17 4312 XP_005250024 17 4312 XP_006715981 17 4312 NP_001243765 16 5631 NP_001243766 16 5631 NP_078914 16 5631 NP_001243764 16 5631 XP_005247827 16 5631 XP_006713807 16 5631 XP_005247826 16 5631 NP_001269346 16 7355 NP_001035915 16 7355 NP_689564 16 7355 NP_001257578 16 7355 NP_001257577 16 7355 XP_006721514 16 7355 XP_006721513 16 7355 XP_005256514 16 7355 NP_057245 16 7355 NP_078997 15 9605>NP_115927 Length = 1321 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVTAELAP 9 S VTAELAP Sbjct: 847 SPVTAELAP 855>NP_001230526 Length = 1287 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSVTAELAP 9 SSV+++LAP Sbjct: 21 SSVSSDLAP 29>NP_058648 Length = 1264 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSVTAELAP 9 SSV+++LAP Sbjct: 21 SSVSSDLAP 29>NP_001082 Length = 751 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT ELAP Sbjct: 380 SVTHELAP 387>NP_001259001 Length = 770 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT ELAP Sbjct: 380 SVTHELAP 387>XP_005250024 Length = 751 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT ELAP Sbjct: 380 SVTHELAP 387>XP_006715981 Length = 770 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT ELAP Sbjct: 380 SVTHELAP 387>NP_001243765 Length = 309 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 131 SSVTAEL 137>NP_001243766 Length = 292 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 114 SSVTAEL 120>NP_078914 Length = 415 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 237 SSVTAEL 243>NP_001243764 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 249 SSVTAEL 255>XP_005247827 Length = 292 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 114 SSVTAEL 120>XP_006713807 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 151 SSVTAEL 157>XP_005247826 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSVTAEL 7 SSVTAEL Sbjct: 151 SSVTAEL 157>NP_001269346 Length = 566 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 415 SVTSSLAP 422>NP_001035915 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 445 SVTSSLAP 452>NP_689564 Length = 612 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 461 SVTSSLAP 468>NP_001257578 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 409 SVTSSLAP 416>NP_001257577 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 418 SVTSSLAP 425>XP_006721514 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 445 SVTSSLAP 452>XP_006721513 Length = 598 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 447 SVTSSLAP 454>XP_005256514 Length = 633 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 SVT+ LAP Sbjct: 482 SVTSSLAP 489>NP_057245 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SVTAELAP 9 SVT EL P Sbjct: 330 SVTGELGP 337>NP_078997 Length = 3616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVTAELAP 9 S TAEL+P Sbjct: 2757 SKTAELSP 2764Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.105 0.250 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 315,876 Number of extensions: 452 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |