Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1482 NP_001263689 18 1482 NP_001119584 18 1482 NP_001119586 18 1482 NP_001263625 18 1482 NP_001119590 18 1482 NP_001263690 18 1482 NP_001119585 18 1482 NP_001263624 18 1482 NP_005388 16 5631 NP_001018121 16 5631 NP_001269891 16 7355 NP_060880 16 7355 NP_001269892 16 7355 NP_063940 15 9605 NP_001265232 15 9605 NP_620308 15 9605 NP_001265233 15 9605 NP_001123885 15 9605 NP_064710 15 9605 XP_005255493 15 9605 XP_006721128 15 9605 XP_005255492 15 9605 NP_001005213 15 9605 NP_001013376 15 9605>NP_000537 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 95 SSVPSQKTY 103>NP_001263689 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 56 SSVPSQKTY 64>NP_001119584 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 95 SSVPSQKTY 103>NP_001119586 Length = 341 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 95 SSVPSQKTY 103>NP_001263625 Length = 302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 56 SSVPSQKTY 64>NP_001119590 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 56 SSVPSQKTY 64>NP_001263690 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 56 SSVPSQKTY 64>NP_001119585 Length = 346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 95 SSVPSQKTY 103>NP_001263624 Length = 307 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SSV SQKTY Sbjct: 56 SSVPSQKTY 64>NP_005388 Length = 526 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSVLSQKT 8 SSV+SQ+T Sbjct: 237 SSVISQRT 244>NP_001018121 Length = 558 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSVLSQKT 8 SSV+SQ+T Sbjct: 269 SSVISQRT 276>NP_001269891 Length = 694 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SS++S KT+ Sbjct: 226 SSIISTKTF 234>NP_060880 Length = 748 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SS++S KT+ Sbjct: 280 SSIISTKTF 288>NP_001269892 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSVLSQKTY 9 SS++S KT+ Sbjct: 195 SSIISTKTF 203>NP_063940 Length = 239 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSVLSQKTY 9 S+ LSQ TY Sbjct: 86 STFLSQTTY 94>NP_001265232 Length = 166 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSVLSQKTY 9 S+ LSQ TY Sbjct: 13 STFLSQTTY 21>NP_620308 Length = 186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSVLSQKTY 9 S+ LSQ TY Sbjct: 33 STFLSQTTY 41>NP_001265233 Length = 186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSVLSQKTY 9 S+ LSQ TY Sbjct: 33 STFLSQTTY 41>NP_001123885 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SVLSQKT 8 +VLSQKT Sbjct: 3 AVLSQKT 9>NP_064710 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLSQKTY 9 S +SQ+TY Sbjct: 918 SAMSQETY 925>XP_005255493 Length = 959 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLSQKTY 9 S +SQ+TY Sbjct: 825 SAMSQETY 832>XP_006721128 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLSQKTY 9 S +SQ+TY Sbjct: 851 SAMSQETY 858>XP_005255492 Length = 1026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLSQKTY 9 S +SQ+TY Sbjct: 892 SAMSQETY 899>NP_001005213 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SSVLSQKTY 9 SS++++KT+ Sbjct: 155 SSIITKKTF 163>NP_001013376 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SSVLSQKTY 9 SS++++KT+ Sbjct: 155 SSIITKKTF 163Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.105 0.241 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,322 Number of extensions: 529 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |