Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 18 1482 NP_004561 18 1482 XP_005253450 18 1482 XP_006719151 18 1482 NP_852125 16 5631 XP_006710661 16 5631 XP_006710659 16 5631 XP_006710658 16 5631 XP_006710657 16 5631 XP_005264049 16 7355 XP_006712694 16 7355 XP_006712693 16 7355 XP_005264045 16 7355 XP_005264042 16 7355 XP_005264038 16 7355 XP_006712692 16 7355 XP_005264037 16 7355 XP_006722357 15 9605>NP_001275701 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSSQVSLSF 9 SSSQVSL F Sbjct: 32 SSSQVSLGF 40>NP_004561 Length = 1445 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSSQVSLSF 9 SSSQVSL F Sbjct: 32 SSSQVSLGF 40>XP_005253450 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSSQVSLSF 9 SSSQVSL F Sbjct: 32 SSSQVSLGF 40>XP_006719151 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSSQVSLSF 9 SSSQVSL F Sbjct: 32 SSSQVSLGF 40>NP_852125 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSQVSLSF 9 SSQ+SL F Sbjct: 397 SSQISLGF 404>XP_006710661 Length = 4057 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSQVSLSF 9 SSS SLSF Sbjct: 1549 SSSSASLSF 1557>XP_006710659 Length = 4556 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSQVSLSF 9 SSS SLSF Sbjct: 1525 SSSSASLSF 1533>XP_006710658 Length = 4563 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSQVSLSF 9 SSS SLSF Sbjct: 1532 SSSSASLSF 1540>XP_006710657 Length = 4579 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSQVSLSF 9 SSS SLSF Sbjct: 1548 SSSSASLSF 1556>XP_005264049 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 689 SSSQVSL 695>XP_006712694 Length = 805 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 782 SSSQVSL 788>XP_006712693 Length = 831 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 808 SSSQVSL 814>XP_005264045 Length = 831 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 808 SSSQVSL 814>XP_005264042 Length = 892 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 869 SSSQVSL 875>XP_005264038 Length = 918 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 895 SSSQVSL 901>XP_006712692 Length = 918 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 895 SSSQVSL 901>XP_005264037 Length = 918 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 SSSQVSL 7 SSSQVSL Sbjct: 895 SSSQVSL 901>XP_006722357 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSQVSLSF 9 S QVSLSF Sbjct: 52 SFPQVSLSF 60Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.102 0.217 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 262,332 Number of extensions: 417 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |