Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004324 18 1135 XP_005250103 18 1135 XP_005250102 18 1135 NP_659410 17 3301 XP_006719103 17 3301 XP_005253384 17 3301 XP_005253383 17 3301 NP_055365 16 5631 NP_055186 16 7355 NP_787036 16 7355 NP_787034 16 7355 NP_787033 16 7355 NP_001257620 16 7355 XP_006723641 16 7355 NP_001035194 16 7355 NP_000746 15 9605 NP_001244292 15 9605 NP_110436 15 9605 XP_006719684 15 9605 XP_005251766 15 9605 XP_005251765 15 9605 XP_005251764 15 9605 XP_005251763 15 9605 XP_005265997 15 9605>NP_004324 Length = 766 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSSASMDSV 9 SSSASMD+V Sbjct: 112 SSSASMDTV 120>XP_005250103 Length = 758 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSSASMDSV 9 SSSASMD+V Sbjct: 112 SSSASMDTV 120>XP_005250102 Length = 767 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSSASMDSV 9 SSSASMD+V Sbjct: 112 SSSASMDTV 120>NP_659410 Length = 1274 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSS SMDS+ Sbjct: 150 SSSCSMDSL 158>XP_006719103 Length = 1296 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSS SMDS+ Sbjct: 172 SSSCSMDSL 180>XP_005253384 Length = 1311 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSS SMDS+ Sbjct: 150 SSSCSMDSL 158>XP_005253383 Length = 1333 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSS SMDS+ Sbjct: 172 SSSCSMDSL 180>NP_055365 Length = 1032 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSS+S DSV Sbjct: 567 SSSSSSDSV 575>NP_055186 Length = 646 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 S SAS DSV Sbjct: 83 SGSASADSV 91>NP_787036 Length = 532 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 SSS SMD V Sbjct: 209 SSSHSMDEV 217>NP_787034 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 SSS SMD V Sbjct: 209 SSSHSMDEV 217>NP_787033 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 SSS SMD V Sbjct: 209 SSSHSMDEV 217>NP_001257620 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 SSS SMD V Sbjct: 209 SSSHSMDEV 217>XP_006723641 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSSASMDSV 9 SSS SMD V Sbjct: 209 SSSHSMDEV 217>NP_001035194 Length = 4493 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSSASMDS 8 SSSA++DS Sbjct: 3733 SSSATLDS 3740>NP_000746 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 470 SASMDSL 476>NP_001244292 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 449 SASMDSL 455>NP_110436 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSASMDS 8 SSAS+DS Sbjct: 345 SSASLDS 351>XP_006719684 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSASMDS 8 SSAS+DS Sbjct: 345 SSASLDS 351>XP_005251766 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 449 SASMDSL 455>XP_005251765 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 449 SASMDSL 455>XP_005251764 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 466 SASMDSL 472>XP_005251763 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASMDSV 9 SASMDS+ Sbjct: 471 SASMDSL 477>XP_005265997 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSSASMDSV 9 SSSA+ D+V Sbjct: 13 SSSAAFDTV 21Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.274 0.0837 0.168 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 354,372 Number of extensions: 441 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |