Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_057381 18 1935 XP_005256701 17 3301 XP_005256700 17 3301 XP_006717169 17 3301 NP_004131 17 3301 NP_898902 17 4312 NP_001073591 17 4312 NP_001073592 17 4312 NP_000302 17 4312 NP_001073590 17 4312 NP_115818 17 4312 NP_001005408 17 4312 NP_003016 16 5631 NP_001186873 16 5631 NP_001186872 16 5631 NP_113623 16 5631 NP_789789 16 5631 XP_006724622 16 5631 XP_005272727 16 5631 NP_001980 16 7355 NP_001191676 16 7355 NP_002904 16 7355 NP_001054 16 7355 NP_001137469 16 7355 NP_001137468 16 7355 NP_060715 16 7355 NP_001073927 16 7355 NP_073606 16 7355 NP_001036039 16 7355 XP_006725372 16 7355 XP_006721716 16 7355 XP_005255025 16 7355 XP_005249697 16 7355 XP_005249696 16 7355 NP_001027006 16 7355 NP_000410 15 9605 NP_001120653 15 9605 NP_001164653 15 9605 NP_201576 15 9605 NP_060421 15 9605 NP_001164554 15 9605 NP_001137154 15 9605 NP_689891 15 9605 NP_689594 15 9605 NP_001186078 15 9605 NP_002334 15 9605 NP_065949 15 9605 NP_060221 15 9605 XP_006721061 15 9605 XP_006719586 15 9605 XP_005265000 15 9605 XP_006713082 15 9605 XP_005263761 15 9605 XP_006712688 15 9605 XP_006712319 15 9605 XP_006710064 15 9605 NP_001186073 15 9605 NP_001129389 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SSR MDEFK Sbjct: 140 SSRLMDEFK 148>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SSR MDEFK Sbjct: 140 SSRLMDEFK 148>NP_057381 Length = 505 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSRPMDEF 8 SSRP+D+F Sbjct: 358 SSRPIDKF 365>XP_005256701 Length = 1062 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP DEF Sbjct: 348 STRPEDEF 355>XP_005256700 Length = 1063 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP DEF Sbjct: 347 STRPEDEF 354>XP_006717169 Length = 468 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSRP DE K Sbjct: 317 SSRPCDEEK 325>NP_004131 Length = 1064 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP DEF Sbjct: 348 STRPEDEF 355>NP_898902 Length = 253 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RPMDE+ Sbjct: 164 RPMDEY 169>NP_001073591 Length = 253 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RPMDE+ Sbjct: 164 RPMDEY 169>NP_001073592 Length = 253 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RPMDE+ Sbjct: 164 RPMDEY 169>NP_000302 Length = 253 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RPMDE+ Sbjct: 164 RPMDEY 169>NP_001073590 Length = 253 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RPMDE+ Sbjct: 164 RPMDEY 169>NP_115818 Length = 1562 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RP+DEF Sbjct: 341 RPLDEF 346>NP_001005408 Length = 1560 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RP+DEF Sbjct: 341 RPLDEF 346>NP_003016 Length = 368 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSRP E+K Sbjct: 248 SSRPKREYK 256>NP_001186873 Length = 304 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSRP E+K Sbjct: 184 SSRPKREYK 192>NP_001186872 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSRP E+K Sbjct: 200 SSRPKREYK 208>NP_113623 Length = 228 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SS P+++FK Sbjct: 196 SSLPLEDFK 204>NP_789789 Length = 433 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP+ EF Sbjct: 249 STRPLQEF 256>XP_006724622 Length = 349 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP+ EF Sbjct: 191 STRPLQEF 198>XP_005272727 Length = 375 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SSRPMDEF 8 S+RP+ EF Sbjct: 191 STRPLQEF 198>NP_001980 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 S RP+D F+ Sbjct: 303 SLRPLDTFR 311>NP_001191676 Length = 1148 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSR D+FK Sbjct: 47 SSRKEDDFK 55>NP_002904 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 SSR D+FK Sbjct: 47 SSRKEDDFK 55>NP_001054 Length = 698 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 RPMDEFK 9 +P+DE+K Sbjct: 252 KPVDEYK 258>NP_001137469 Length = 801 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SS P+++FK Sbjct: 400 SSVPLEDFK 408>NP_001137468 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SS P+++FK Sbjct: 552 SSVPLEDFK 560>NP_060715 Length = 1010 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 SS P+++FK Sbjct: 609 SSVPLEDFK 617>NP_001073927 Length = 476 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 S RP+D F+ Sbjct: 315 SIRPLDTFR 323>NP_073606 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSRPMDE 7 SS+P+DE Sbjct: 128 SSQPLDE 134>NP_001036039 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSRPMDE 7 SS+P+DE Sbjct: 128 SSQPLDE 134>XP_006725372 Length = 666 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRPMDEF 8 ++P+DEF Sbjct: 652 NKPLDEF 658>XP_006721716 Length = 666 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRPMDEF 8 ++P+DEF Sbjct: 652 NKPLDEF 658>XP_005255025 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSRPMDE 7 SS+P+DE Sbjct: 128 SSQPLDE 134>XP_005249697 Length = 225 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 S RP+D F+ Sbjct: 121 SLRPLDTFR 129>XP_005249696 Length = 225 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSRPMDEFK 9 S RP+D F+ Sbjct: 121 SLRPLDTFR 129>NP_001027006 Length = 1149 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SRPMDEFK 9 +RP +EFK Sbjct: 1019 TRPANEFK 1026>NP_000410 Length = 1039 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 3 RPMDEF 8 RP+D+F Sbjct: 948 RPLDQF 953>NP_001120653 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSRPMDEF 8 SSRP D F Sbjct: 14 SSRPEDYF 21>NP_001164653 Length = 344 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSRPMDEF 8 SSRP D F Sbjct: 14 SSRPEDYF 21>NP_201576 Length = 344 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSRPMDEF 8 SSRP D F Sbjct: 14 SSRPEDYF 21>NP_060421 Length = 866 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 ++ P++EFK Sbjct: 396 ATSPLEEFK 404>NP_001164554 Length = 764 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 ++ P++EFK Sbjct: 294 ATSPLEEFK 302>NP_001137154 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 RPMDE 7 RPMDE Sbjct: 89 RPMDE 93>NP_689891 Length = 608 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SSRPMDE 7 S RP+DE Sbjct: 13 SRRPLDE 19>NP_689594 Length = 3549 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRPMDEF 8 +RP+D+F Sbjct: 1023 TRPIDQF 1029>NP_001186078 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 RPMDEFK 9 +P+D+FK Sbjct: 212 KPVDKFK 218>NP_002334 Length = 710 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 RPMDEFK 9 +P+D+FK Sbjct: 256 KPVDKFK 262>NP_065949 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 RPMDE 7 RPMDE Sbjct: 122 RPMDE 126>NP_060221 Length = 837 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 ++ P++EFK Sbjct: 367 ATSPLEEFK 375>XP_006721061 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SSRPMD 6 SSRP+D Sbjct: 6 SSRPLD 11>XP_006719586 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 RPMDE 7 RPMDE Sbjct: 122 RPMDE 126>XP_005265000 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SSRPMDE 7 S RP+DE Sbjct: 13 SRRPLDE 19>XP_006713082 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SSRPMDE 7 S RP+DE Sbjct: 13 SRRPLDE 19>XP_005263761 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 ++ P++EFK Sbjct: 60 ATSPLEEFK 68>XP_006712688 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SSRPMDEFK 9 ++ P++EFK Sbjct: 89 ATSPLEEFK 97>XP_006712319 Length = 3308 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRPMDEF 8 +RP+D+F Sbjct: 782 TRPIDQF 788>XP_006710064 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SSRPMD 6 SSRP+D Sbjct: 6 SSRPLD 11>NP_001186073 Length = 3327 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRPMDEF 8 +RP+D+F Sbjct: 801 TRPIDQF 807>NP_001129389 Length = 195 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SRPMDEF 8 SRP+ EF Sbjct: 153 SRPVSEF 159Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.125 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 733,700 Number of extensions: 791 Number of successful extensions: 60 Number of sequences better than 10000.0: 60 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 60 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |