Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 19 869 NP_004561 19 869 XP_005253450 19 869 XP_006719151 19 869 XP_006716433 18 1935 XP_005273633 18 1935 XP_006716432 18 1935 XP_005273632 18 1935 NP_112561 18 1935 NP_001138811 17 4312 NP_002383 17 4312 NP_055625 17 4312 NP_001138809 17 4312 XP_006719463 17 4312 XP_006719462 17 4312 XP_005268929 17 4312 XP_006711734 17 4312 XP_006711733 17 4312 XP_006711732 17 4312 XP_006711731 17 4312 XP_006711730 17 4312 XP_006711729 17 4312 XP_005245695 17 4312 NP_852125 16 5631 XP_005268276 16 5631 NP_004265 16 5631 NP_848561 15 9605 NP_003408 15 9605 NP_001018857 15 9605 XP_005259487 15 9605 XP_006723570 15 9605 NP_899231 15 9605>NP_001275701 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSQVSLSFD 9 SSQVSL FD Sbjct: 33 SSQVSLGFD 41>NP_004561 Length = 1445 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSQVSLSFD 9 SSQVSL FD Sbjct: 33 SSQVSLGFD 41>XP_005253450 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSQVSLSFD 9 SSQVSL FD Sbjct: 33 SSQVSLGFD 41>XP_006719151 Length = 1486 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSQVSLSFD 9 SSQVSL FD Sbjct: 33 SSQVSLGFD 41>XP_006716433 Length = 3069 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSQVSLSFD 9 +S++SLSFD Sbjct: 1131 NSEISLSFD 1139>XP_005273633 Length = 3069 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSQVSLSFD 9 +S++SLSFD Sbjct: 1131 NSEISLSFD 1139>XP_006716432 Length = 3172 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSQVSLSFD 9 +S++SLSFD Sbjct: 1234 NSEISLSFD 1242>XP_005273632 Length = 3172 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSQVSLSFD 9 +S++SLSFD Sbjct: 1234 NSEISLSFD 1242>NP_112561 Length = 2789 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SSQVSLSFD 9 +S++SLSFD Sbjct: 851 NSEISLSFD 859>NP_001138811 Length = 442 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 137 SDSISLSFD 145>NP_002383 Length = 497 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 192 SDSISLSFD 200>NP_055625 Length = 3117 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1261 SSQKSLQFD 1269>NP_001138809 Length = 444 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 186 SDSISLSFD 194>XP_006719463 Length = 390 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 85 SDSISLSFD 93>XP_006719462 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 125 SDSISLSFD 133>XP_005268929 Length = 491 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S +SLSFD Sbjct: 186 SDSISLSFD 194>XP_006711734 Length = 3136 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1239 SSQKSLQFD 1247>XP_006711733 Length = 3137 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1240 SSQKSLQFD 1248>XP_006711732 Length = 3154 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1257 SSQKSLQFD 1265>XP_006711731 Length = 3157 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1260 SSQKSLQFD 1268>XP_006711730 Length = 3157 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1260 SSQKSLQFD 1268>XP_006711729 Length = 3158 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1261 SSQKSLQFD 1269>XP_005245695 Length = 3158 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 SSQ SL FD Sbjct: 1261 SSQKSLQFD 1269>NP_852125 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSQVSLSF 8 SSQ+SL F Sbjct: 397 SSQISLGF 404>XP_005268276 Length = 2320 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQVSLSFD 9 SQVSLS D Sbjct: 295 SQVSLSVD 302>NP_004265 Length = 2319 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQVSLSFD 9 SQVSLS D Sbjct: 295 SQVSLSVD 302>NP_848561 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSQVSLSFD 9 S+ +SL FD Sbjct: 116 SANISLEFD 124>NP_003408 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SQVSLSFD 9 +QVS++FD Sbjct: 10 AQVSVTFD 17>NP_001018857 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SQVSLSFD 9 +QVS++FD Sbjct: 9 AQVSVTFD 16>XP_005259487 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SQVSLSFD 9 +QVS++FD Sbjct: 11 TQVSVTFD 18>XP_006723570 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SQVSLSFD 9 +QVS++FD Sbjct: 10 AQVSVTFD 17>NP_899231 Length = 328 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QVSLSFD 9 QVSL FD Sbjct: 42 QVSLHFD 48Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.113 0.261 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 255,040 Number of extensions: 264 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |