Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_001138537 18 1482 NP_997374 18 1482 XP_006726821 17 2528 XP_006726817 17 2528 XP_006726816 17 2528 XP_006726811 17 2528 XP_006726810 17 2528 XP_006722325 17 2528 NP_001135797 17 3301 NP_001135796 17 3301 NP_003044 17 3301 NP_001129163 17 3301 NP_065770 17 3301 NP_001167569 17 4312 NP_060814 17 4312 XP_006717973 17 4312 NP_054860 16 5631 NP_006246 16 7355 NP_001265596 16 7355 NP_057361 16 7355 NP_899050 16 7355 NP_001265597 16 7355 NP_001265595 16 7355 NP_008969 15 9605 NP_001276005 15 9605 NP_001276008 15 9605 NP_001029030 15 9605 NP_071932 15 9605 NP_001276006 15 9605 NP_001029029 15 9605 NP_001029027 15 9605 NP_001276007 15 9605 NP_001244210 15 9605 NP_689596 15 9605 NP_079467 15 9605 XP_005252615 15 9605 XP_006717554 15 9605 XP_005245556 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSNRVGVHI 9 SSN VGVHI Sbjct: 1345 SSNTVGVHI 1353>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SSNRVGVHI 9 SSN VGVHI Sbjct: 1140 SSNTVGVHI 1148>NP_001138537 Length = 900 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSNRVGVH 8 SSN VGVH Sbjct: 35 SSNTVGVH 42>NP_997374 Length = 677 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSNRVGVH 8 SSN VGVH Sbjct: 35 SSNTVGVH 42>XP_006726821 Length = 408 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>XP_006726817 Length = 477 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>XP_006726816 Length = 477 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>XP_006726811 Length = 499 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>XP_006726810 Length = 499 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>XP_006722325 Length = 408 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 +S+R+GVH+ Sbjct: 38 TSSRLGVHV 46>NP_001135797 Length = 472 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SNRVGVHI 9 +NR+G HI Sbjct: 161 TNRIGYHI 168>NP_001135796 Length = 493 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SNRVGVHI 9 +NR+G HI Sbjct: 161 TNRIGYHI 168>NP_003044 Length = 525 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SNRVGVHI 9 +NR+G HI Sbjct: 161 TNRIGYHI 168>NP_001129163 Length = 525 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SNRVGVHI 9 +NR+G HI Sbjct: 161 TNRIGYHI 168>NP_065770 Length = 2036 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSNRVGVHI 9 S+++VGVH+ Sbjct: 815 SASKVGVHL 823>NP_001167569 Length = 258 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NRVGVHI 9 NRV VHI Sbjct: 127 NRVAVHI 133>NP_060814 Length = 475 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NRVGVHI 9 NRV VHI Sbjct: 127 NRVAVHI 133>XP_006717973 Length = 397 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NRVGVHI 9 NRV VHI Sbjct: 49 NRVAVHI 55>NP_054860 Length = 1331 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSNRVGVHI 9 + ++VGVHI Sbjct: 427 TESKVGVHI 435>NP_006246 Length = 683 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSNR+G+ Sbjct: 346 SSNRLGI 352>NP_001265596 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSN++GV Sbjct: 187 SSNKIGV 193>NP_057361 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSN++GV Sbjct: 187 SSNKIGV 193>NP_899050 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSN++GV Sbjct: 187 SSNKIGV 193>NP_001265597 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSN++GV Sbjct: 187 SSNKIGV 193>NP_001265595 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SSNRVGV 7 SSN++GV Sbjct: 187 SSNKIGV 193>NP_008969 Length = 930 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SNRVGVH 8 SN+VG H Sbjct: 867 SNKVGSH 873>NP_001276005 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 161 SRNRIPLHI 169>NP_001276008 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 156 SRNRIPLHI 164>NP_001029030 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 156 SRNRIPLHI 164>NP_071932 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 161 SRNRIPLHI 169>NP_001276006 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 156 SRNRIPLHI 164>NP_001029029 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 156 SRNRIPLHI 164>NP_001029027 Length = 692 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 276 SRNRIPLHI 284>NP_001276007 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 161 SRNRIPLHI 169>NP_001244210 Length = 603 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RVGVHI 9 +VGVHI Sbjct: 405 KVGVHI 410>NP_689596 Length = 885 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RVGVHI 9 +VGVHI Sbjct: 405 KVGVHI 410>NP_079467 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 SSN VGV I Sbjct: 266 SSNLVGVTI 274>XP_005252615 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 156 SRNRIPLHI 164>XP_006717554 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 S NR+ +HI Sbjct: 161 SRNRIPLHI 169>XP_005245556 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSNRVGVHI 9 SSN VGV I Sbjct: 266 SSNLVGVTI 274Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 490,818 Number of extensions: 805 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |