Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001269329 18 1935 NP_001011657 18 1935 NP_001269330 18 1935 XP_006724775 18 1935 XP_006724774 18 1935 XP_005262273 18 1935 XP_005262271 18 1935 XP_006724773 18 1935 XP_005262270 18 1935 XP_005262269 18 1935 NP_003599 17 4312 NP_001273575 16 5631 NP_001073900 16 5631 NP_001127911 16 5631 NP_001127910 16 5631 NP_665696 16 5631 NP_001273577 16 5631 XP_006716668 16 5631 XP_006716667 16 5631 NP_001127909 16 5631 NP_065802 16 7355 NP_001138551 16 7355 NP_002067 16 7355 NP_001025147 15 9605 NP_008889 15 9605 NP_000882 15 9605 NP_064509 15 9605 NP_001171616 15 9605 NP_001171617 15 9605 NP_055268 15 9605 NP_940818 15 9605 NP_001263215 15 9605 NP_849144 15 9605 XP_005258804 15 9605 XP_005258803 15 9605 XP_005272398 15 9605 XP_006713663 15 9605 XP_006713660 15 9605 XP_005247434 15 9605 XP_006713659 15 9605>NP_001269329 Length = 467 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 77 SSLETRRY 84>NP_001011657 Length = 638 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 248 SSLETRRY 255>NP_001269330 Length = 467 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 77 SSLETRRY 84>XP_006724775 Length = 450 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 60 SSLETRRY 67>XP_006724774 Length = 467 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 77 SSLETRRY 84>XP_005262273 Length = 598 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 208 SSLETRRY 215>XP_005262271 Length = 695 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 305 SSLETRRY 312>XP_006724773 Length = 699 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 309 SSLETRRY 316>XP_005262270 Length = 717 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 327 SSLETRRY 334>XP_005262269 Length = 718 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SSLRTRRY 8 SSL TRRY Sbjct: 328 SSLETRRY 335>NP_003599 Length = 337 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LRTRRYA 9 LRTRR+A Sbjct: 125 LRTRRFA 131>NP_001273575 Length = 808 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSLRTRRYA 9 SS+R RR+A Sbjct: 410 SSMRRRRHA 418>NP_001073900 Length = 798 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSLRTRRYA 9 SS+R RR+A Sbjct: 359 SSMRRRRHA 367>NP_001127911 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLRTRRYA 9 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_001127910 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLRTRRYA 9 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_665696 Length = 1210 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLRTRRYA 9 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_001273577 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSLRTRRYA 9 SS+R RR+A Sbjct: 359 SSMRRRRHA 367>XP_006716668 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSLRTRRYA 9 SS+R RR+A Sbjct: 217 SSMRRRRHA 225>XP_006716667 Length = 768 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SSLRTRRYA 9 SS+R RR+A Sbjct: 410 SSMRRRRHA 418>NP_001127909 Length = 1237 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLRTRRYA 9 +LRTR+Y+ Sbjct: 262 NLRTRKYS 269>NP_065802 Length = 657 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSLRTRR 7 +SLRTRR Sbjct: 67 NSLRTRR 73>NP_001138551 Length = 615 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSLRTRR 7 +SLRTRR Sbjct: 67 NSLRTRR 73>NP_002067 Length = 552 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLRTRRYA 9 S+RTRR++ Sbjct: 541 SVRTRRFS 548>NP_001025147 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SLRTRR 7 SLRTRR Sbjct: 3 SLRTRR 8>NP_008889 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SLRTRR 7 SLRTRR Sbjct: 3 SLRTRR 8>NP_000882 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLRTRRYA 9 S+RT RY+ Sbjct: 3 SVRTNRYS 10>NP_064509 Length = 207 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 SSL RRY Sbjct: 158 SSLELRRY 165>NP_001171616 Length = 650 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 116 SGHRTRRY 123>NP_001171617 Length = 602 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 68 SGHRTRRY 75>NP_055268 Length = 222 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRTRRY 8 +RTRRY Sbjct: 67 VRTRRY 72>NP_940818 Length = 222 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRTRRY 8 +RTRRY Sbjct: 67 VRTRRY 72>NP_001263215 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSLRTRRYA 9 SSLR R Y+ Sbjct: 401 SSLRKRTYS 409>NP_849144 Length = 2623 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 2089 SGHRTRRY 2096>XP_005258804 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRTRRY 8 +RTRRY Sbjct: 67 VRTRRY 72>XP_005258803 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRTRRY 8 +RTRRY Sbjct: 67 VRTRRY 72>XP_005272398 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SLRTRR 7 SLRTRR Sbjct: 3 SLRTRR 8>XP_006713663 Length = 602 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 68 SGHRTRRY 75>XP_006713660 Length = 2623 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 2089 SGHRTRRY 2096>XP_005247434 Length = 2623 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 2089 SGHRTRRY 2096>XP_006713659 Length = 2695 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SSLRTRRY 8 S RTRRY Sbjct: 2161 SGHRTRRY 2168Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.123 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 371,727 Number of extensions: 543 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |