Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_000526 17 4312 NP_006378 17 4312 XP_006715807 17 4312 XP_006715806 17 4312 XP_006715805 17 4312 NP_114111 16 5631 NP_490595 16 5631 NP_001154482 16 5631 XP_005250685 16 5631 XP_005250684 16 5631 XP_005250683 16 5631 XP_005250682 16 5631 XP_005250681 16 5631 XP_005250680 16 5631 XP_005250678 16 5631 XP_005263889 16 5631 XP_006712890 16 5631 XP_005263888 16 5631 XP_005263887 16 5631 NP_001139784 16 7355 NP_705832 16 7355 NP_061963 16 7355 XP_005256921 16 7355 NP_001232 16 7355 NP_653303 15 9605 NP_001019554 15 9605 NP_705618 15 9605 NP_055718 15 9605 NP_004289 15 9605 NP_064539 15 9605 NP_001265241 15 9605 XP_006719740 15 9605 XP_006719739 15 9605 XP_006719738 15 9605 XP_005269272 15 9605 XP_005244985 15 9605 XP_005244984 15 9605 XP_006711250 15 9605 XP_006711249 15 9605 XP_005244983 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSKSSGAIS 9 SSKS+GAIS Sbjct: 1681 SSKSTGAIS 1689>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SSKSSGAIS 9 SSKS+GAIS Sbjct: 1476 SSKSTGAIS 1484>NP_000526 Length = 862 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SS +SGAIS Sbjct: 455 SSSTSGAIS 463>NP_006378 Length = 916 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 757 SSKSSGSYS 765>XP_006715807 Length = 551 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SS +SGAIS Sbjct: 144 SSSTSGAIS 152>XP_006715806 Length = 810 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SS +SGAIS Sbjct: 403 SSSTSGAIS 411>XP_006715805 Length = 860 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SS +SGAIS Sbjct: 453 SSSTSGAIS 461>NP_114111 Length = 343 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>NP_490595 Length = 730 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 637 SSKSSGSSS 645>NP_001154482 Length = 284 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250685 Length = 193 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250684 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250683 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250682 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250681 Length = 271 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250680 Length = 295 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005250678 Length = 354 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SSKSSGAI 8 SSKS+GA+ Sbjct: 42 SSKSAGAL 49>XP_005263889 Length = 555 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 462 SSKSSGSSS 470>XP_006712890 Length = 586 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 493 SSKSSGSSS 501>XP_005263888 Length = 586 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 493 SSKSSGSSS 501>XP_005263887 Length = 709 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 SSKSSG+ S Sbjct: 616 SSKSSGSSS 624>NP_001139784 Length = 986 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SKSSGAIS 9 SKSS AIS Sbjct: 756 SKSSSAIS 763>NP_705832 Length = 938 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SKSSGAIS 9 SKSS AIS Sbjct: 708 SKSSSAIS 715>NP_061963 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSKSSGAI 8 S KSSGA+ Sbjct: 621 SEKSSGAL 628>XP_005256921 Length = 907 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SKSSGAIS 9 SKSS AIS Sbjct: 677 SKSSSAIS 684>NP_001232 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSKSSGAI 8 SSKSSG + Sbjct: 637 SSKSSGGL 644>NP_653303 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27>NP_001019554 Length = 2385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 1167 SSKSAGA 1173>NP_705618 Length = 1391 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 S+KSS AIS Sbjct: 1124 SAKSSTAIS 1132>NP_055718 Length = 2363 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 1167 SSKSAGA 1173>NP_004289 Length = 1332 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 S+KSS AIS Sbjct: 1065 SAKSSTAIS 1073>NP_064539 Length = 242 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSKSSGAIS 9 SSKSSG S Sbjct: 219 SSKSSGKSS 227>NP_001265241 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 S+KSS AIS Sbjct: 1060 SAKSSTAIS 1068>XP_006719740 Length = 1863 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 667 SSKSAGA 673>XP_006719739 Length = 2306 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 1110 SSKSAGA 1116>XP_006719738 Length = 2340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 1144 SSKSAGA 1150>XP_005269272 Length = 2356 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSKSSGA 7 SSKS+GA Sbjct: 1167 SSKSAGA 1173>XP_005244985 Length = 481 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27>XP_005244984 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27>XP_006711250 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27>XP_006711249 Length = 526 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27>XP_005244983 Length = 560 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSKSSGAIS 9 + KSSGA++ Sbjct: 19 TQKSSGAVT 27Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.272 0.0901 0.188 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 327,708 Number of extensions: 307 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |