Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_653252 17 2528 XP_005251225 17 2528 XP_006716483 17 2528 XP_005251224 17 2528 NP_055660 17 3301 NP_001124295 17 3301 NP_001370 17 3301 XP_006722744 17 3301 NP_002115 16 5631 NP_002112 16 5631 NP_001123616 16 5631 NP_777579 16 5631 NP_066548 16 5631 NP_001269219 16 5631 NP_001157738 16 5631 XP_006725678 16 5631 XP_006725677 16 5631 XP_006725674 16 5631 XP_006725673 16 5631 XP_006725672 16 5631 XP_006725671 16 5631 XP_006725325 16 5631 XP_006725324 16 5631 XP_006725323 16 5631 XP_006725322 16 5631 XP_006721813 16 5631 XP_006721812 16 5631 XP_006721811 16 5631 XP_006721810 16 5631 XP_006721809 16 5631 XP_006721808 16 5631 XP_003961004 16 5631 XP_005276139 16 5631 NP_001230894 16 5631 NP_001230891 16 5631 NP_065197 16 7355 NP_068370 16 7355 NP_002763 16 7355 NP_056208 16 7355 NP_037394 16 7355 XP_005267119 16 7355 XP_005249090 16 7355 NP_653313 16 7355 NP_002225 15 9605>NP_653252 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 S G FRAVT Sbjct: 1304 SRGQFRAVT 1312>XP_005251225 Length = 848 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 S G FRAVT Sbjct: 689 SRGQFRAVT 697>XP_006716483 Length = 1367 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 S G FRAVT Sbjct: 1208 SRGQFRAVT 1216>XP_005251224 Length = 1439 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 S G FRAVT Sbjct: 1280 SRGQFRAVT 1288>NP_055660 Length = 907 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SSGSFRAVT 9 SSG FRAV+ Sbjct: 83 SSGLFRAVS 91>NP_001124295 Length = 1632 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 SSG FR +T Sbjct: 1374 SSGPFRTIT 1382>NP_001370 Length = 1616 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 SSG FR +T Sbjct: 1358 SSGPFRTIT 1366>XP_006722744 Length = 1495 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 SSG FR +T Sbjct: 1237 SSGPFRTIT 1245>NP_002115 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 74 GEFRAVT 80>NP_002112 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 72 GEFRAVT 78>NP_001123616 Length = 1303 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSGSFRAV 8 +SGSFR V Sbjct: 1276 TSGSFRCV 1283>NP_777579 Length = 263 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>NP_066548 Length = 1256 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSGSFRAV 8 +SGSFR V Sbjct: 1229 TSGSFRCV 1236>NP_001269219 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>NP_001157738 Length = 1139 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSGSFRAV 8 +SGSFR V Sbjct: 1112 TSGSFRCV 1119>XP_006725678 Length = 615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725677 Length = 619 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725674 Length = 832 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725673 Length = 867 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725672 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725671 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725325 Length = 832 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725324 Length = 867 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725323 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006725322 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721813 Length = 615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721812 Length = 619 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721811 Length = 832 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721810 Length = 867 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721809 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_006721808 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 174 SSGSFKA 180>XP_003961004 Length = 293 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 109 GEFRAVT 115>XP_005276139 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 109 GEFRAVT 115>NP_001230894 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 74 GEFRAVT 80>NP_001230891 Length = 261 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GSFRAVT 9 G FRAVT Sbjct: 77 GEFRAVT 83>NP_065197 Length = 1610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SSGSFR 6 SSGSFR Sbjct: 6 SSGSFR 11>NP_068370 Length = 614 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SSGSFRAVT 9 S+GSF+++T Sbjct: 37 SNGSFQSLT 45>NP_002763 Length = 1019 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SSGSFRA 7 SSGSF+A Sbjct: 234 SSGSFQA 240>NP_056208 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SSGSFRAVT 9 SSGS A+T Sbjct: 255 SSGSIAAIT 263>NP_037394 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSGSFRAVT 9 +SG +RA+T Sbjct: 261 ASGLYRAIT 269>XP_005267119 Length = 1654 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SSGSFR 6 SSGSFR Sbjct: 6 SSGSFR 11>XP_005249090 Length = 264 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SSGSFRAVT 9 +SG +RA+T Sbjct: 80 ASGLYRAIT 88>NP_653313 Length = 493 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SSGSFR 6 SSGSFR Sbjct: 251 SSGSFR 256>NP_002225 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SSGSFRAV 8 SSGS RA+ Sbjct: 245 SSGSARAI 252Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.116 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 454,052 Number of extensions: 551 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |