Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 18 1935 NP_001185763 18 1935 NP_055459 18 1935 XP_006726410 18 1935 XP_006711719 18 1935 XP_006711718 18 1935 XP_006711717 18 1935 XP_006711716 18 1935 XP_006711715 18 1935 XP_006711714 18 1935 XP_006711713 18 1935 XP_006711712 18 1935 XP_006711711 18 1935 XP_006711710 18 1935 XP_006711709 18 1935 XP_005277503 18 1935 XP_005273038 18 1935 XP_006711708 18 1935 XP_005277500 18 1935 XP_006711707 18 1935 XP_005277499 18 1935 XP_006711706 18 1935 XP_006711705 18 1935 XP_006711164 18 1935 XP_006710143 18 1935 XP_006710142 18 1935 XP_006710141 18 1935 XP_006726897 17 2528 XP_006724471 17 2528 XP_006710181 17 2528 XP_005257087 17 4312 XP_005257086 17 4312 NP_694941 17 4312 NP_001099010 16 5631 XP_006718648 16 5631 XP_006718417 16 5631 XP_005253237 16 5631 XP_005253236 16 5631 NP_114432 16 7355 NP_001092688 16 7355 NP_065810 16 7355 XP_006720684 16 7355 XP_005262682 16 7355 NP_115811 15 9605 NP_115691 15 9605 NP_542416 15 9605 NP_542414 15 9605 NP_006255 15 9605 NP_065770 15 9605 XP_005263224 15 9605>NP_001185761 Length = 2240 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1333 SRVRSLSVT 1341>NP_001185763 Length = 2362 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1377 SRVRSLSVT 1385>NP_055459 Length = 2346 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1377 SRVRSLSVT 1385>XP_006726410 Length = 2087 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1180 SRVRSLSVT 1188>XP_006711719 Length = 2302 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1333 SRVRSLSVT 1341>XP_006711718 Length = 1436 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 384 SRVRSLSVT 392>XP_006711717 Length = 2385 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1333 SRVRSLSVT 1341>XP_006711716 Length = 2411 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1442 SRVRSLSVT 1450>XP_006711715 Length = 2428 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1376 SRVRSLSVT 1384>XP_006711714 Length = 2429 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1377 SRVRSLSVT 1385>XP_006711713 Length = 2432 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1380 SRVRSLSVT 1388>XP_006711712 Length = 2473 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_006711711 Length = 2482 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1430 SRVRSLSVT 1438>XP_006711710 Length = 2494 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1442 SRVRSLSVT 1450>XP_006711709 Length = 2495 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1443 SRVRSLSVT 1451>XP_005277503 Length = 2498 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_005273038 Length = 2509 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_006711708 Length = 2512 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_005277500 Length = 2525 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_006711707 Length = 2553 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_005277499 Length = 2561 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_006711706 Length = 2591 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1539 SRVRSLSVT 1547>XP_006711705 Length = 2592 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1540 SRVRSLSVT 1548>XP_006711164 Length = 2087 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 1180 SRVRSLSVT 1188>XP_006710143 Length = 562 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 219 SRVRSLSVT 227>XP_006710142 Length = 671 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 328 SRVRSLSVT 336>XP_006710141 Length = 672 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVRPLSVT 9 SRVR LSVT Sbjct: 329 SRVRSLSVT 337>XP_006726897 Length = 313 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SRVRPLSV 8 SRVRPL V Sbjct: 60 SRVRPLEV 67>XP_006724471 Length = 313 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SRVRPLSV 8 SRVRPL V Sbjct: 60 SRVRPLEV 67>XP_006710181 Length = 313 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SRVRPLSV 8 SRVRPL V Sbjct: 60 SRVRPLEV 67>XP_005257087 Length = 957 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRPLSV 8 RVRP+SV Sbjct: 17 RVRPISV 23>XP_005257086 Length = 999 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRPLSV 8 RVRP+SV Sbjct: 17 RVRPISV 23>NP_694941 Length = 998 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRPLSV 8 RVRP+SV Sbjct: 17 RVRPISV 23>NP_001099010 Length = 1117 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SRVRPLS 7 +RVRPLS Sbjct: 215 TRVRPLS 221>XP_006718648 Length = 177 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SRVRPLS 7 S+VRPLS Sbjct: 130 SKVRPLS 136>XP_006718417 Length = 1118 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SRVRPLS 7 +RVRPLS Sbjct: 215 TRVRPLS 221>XP_005253237 Length = 1160 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SRVRPLS 7 +RVRPLS Sbjct: 258 TRVRPLS 264>XP_005253236 Length = 1161 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SRVRPLS 7 +RVRPLS Sbjct: 258 TRVRPLS 264>NP_114432 Length = 1249 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 RVRPLSVT 9 R+RPL T Sbjct: 160 RIRPLETT 167>NP_001092688 Length = 1159 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SRVRPL 6 SRVRPL Sbjct: 1118 SRVRPL 1123>NP_065810 Length = 4700 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RVRPLS 7 RVRPLS Sbjct: 9 RVRPLS 14>XP_006720684 Length = 4713 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RVRPLS 7 RVRPLS Sbjct: 9 RVRPLS 14>XP_005262682 Length = 1150 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SRVRPL 6 SRVRPL Sbjct: 1109 SRVRPL 1114>NP_115811 Length = 1036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 RVRPLS 7 R+RPLS Sbjct: 609 RIRPLS 614>NP_115691 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VRPLSVT 9 VRP SVT Sbjct: 65 VRPTSVT 71>NP_542416 Length = 2490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VRPLSV 8 VRPLSV Sbjct: 922 VRPLSV 927>NP_542414 Length = 2485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VRPLSV 8 VRPLSV Sbjct: 922 VRPLSV 927>NP_006255 Length = 2466 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VRPLSV 8 VRPLSV Sbjct: 922 VRPLSV 927>NP_065770 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RVRPLSV 8 R+RPL V Sbjct: 1175 RIRPLEV 1181>XP_005263224 Length = 2491 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VRPLSV 8 VRPLSV Sbjct: 928 VRPLSV 933Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 508,268 Number of extensions: 547 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |