Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 17 2528 NP_001011705 17 4312 NP_008946 17 4312 XP_006719824 17 4312 XP_006719823 17 4312 NP_002221 16 5631 NP_001895 16 5631 NP_001091680 16 5631 NP_068831 16 5631 NP_001091679 16 5631 NP_689777 16 5631 NP_060360 16 5631 XP_006721941 16 5631 XP_006721940 16 5631 XP_006721939 16 5631 XP_006721938 16 5631 XP_006721937 16 5631 XP_006721936 16 5631 XP_006721935 16 5631 XP_006721934 16 5631 XP_005257370 16 5631 XP_006716573 16 5631 XP_005250858 16 5631 XP_005250857 16 5631 XP_006713048 16 5631 XP_006713047 16 5631 XP_006713046 16 5631 XP_005264943 16 5631 NP_996772 16 7355 NP_940927 15 9605 NP_005370 15 9605 NP_000443 15 9605 NP_001242970 15 9605 XP_006720560 15 9605 XP_005254961 15 9605 XP_005254960 15 9605 XP_005254959 15 9605 NP_001004760 15 9605>NP_004295 Length = 1620 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLK GSV Sbjct: 124 SRVLKGGSV 132>NP_001011705 Length = 333 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SRVLKVGSV 9 +R+LKVG+V Sbjct: 37 ARLLKVGAV 45>NP_008946 Length = 334 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SRVLKVGSV 9 +R+LKVG+V Sbjct: 37 ARLLKVGAV 45>XP_006719824 Length = 217 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SRVLKVGSV 9 +R+LKVG+V Sbjct: 37 ARLLKVGAV 45>XP_006719823 Length = 218 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SRVLKVGSV 9 +R+LKVG+V Sbjct: 37 ARLLKVGAV 45>NP_002221 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>NP_001895 Length = 781 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 341 SRVLKVLSV 349>NP_001091680 Length = 781 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 341 SRVLKVLSV 349>NP_068831 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>NP_001091679 Length = 781 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 341 SRVLKVLSV 349>NP_689777 Length = 3997 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 VLK+GSV Sbjct: 1555 VLKIGSV 1561>NP_060360 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_006721941 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721940 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721939 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721938 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721937 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721936 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 332 SRVLKVLSV 340>XP_006721935 Length = 762 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 349 SRVLKVLSV 357>XP_006721934 Length = 783 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 370 SRVLKVLSV 378>XP_005257370 Length = 783 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 370 SRVLKVLSV 378>XP_006716573 Length = 1776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250858 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250857 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_006713048 Length = 720 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 341 SRVLKVLSV 349>XP_006713047 Length = 774 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 334 SRVLKVLSV 342>XP_006713046 Length = 774 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 334 SRVLKVLSV 342>XP_005264943 Length = 781 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 SRVLKV SV Sbjct: 341 SRVLKVLSV 349>NP_996772 Length = 889 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRVLKVGS 8 SRVL+VG+ Sbjct: 875 SRVLQVGA 882>NP_940927 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVLKVGS 8 RVLK GS Sbjct: 258 RVLKTGS 264>NP_005370 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 S VLK+G+V Sbjct: 269 SMVLKLGNV 277>NP_000443 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VLKVGSV 9 +LK+GS+ Sbjct: 193 ILKIGSI 199>NP_001242970 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRVLKVGSV 9 S VLK+G+V Sbjct: 269 SMVLKLGNV 277>XP_006720560 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVLKVGS 8 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254961 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVLKVGS 8 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254960 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVLKVGS 8 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254959 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVLKVGS 8 RVLK GS Sbjct: 258 RVLKTGS 264>NP_001004760 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SRVLKVG 7 SR++K+G Sbjct: 148 SRIIKIG 154Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.132 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 366,339 Number of extensions: 364 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |