Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 19 869 NP_009297 19 869 NP_689594 16 5631 NP_001186074 16 5631 NP_001186072 16 5631 NP_001073278 16 5631 XP_006712319 16 5631 NP_001186073 16 5631 NP_055054 16 7355 NP_031397 15 9605 XP_005272271 15 9605 XP_006717354 15 9605>NP_005148 Length = 1130 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRSSEQMAS 9 SR+SEQMAS Sbjct: 1044 SRNSEQMAS 1052>NP_009297 Length = 1149 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRSSEQMAS 9 SR+SEQMAS Sbjct: 1063 SRNSEQMAS 1071>NP_689594 Length = 3549 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 297 SRSSQEMA 304>NP_001186074 Length = 716 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 75 SRSSQEMA 82>NP_001186072 Length = 971 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 330 SRSSQEMA 337>NP_001073278 Length = 938 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 297 SRSSQEMA 304>XP_006712319 Length = 3308 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 56 SRSSQEMA 63>NP_001186073 Length = 3327 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SRSSEQMA 8 SRSS++MA Sbjct: 75 SRSSQEMA 82>NP_055054 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RSSEQMA 8 RSSE+MA Sbjct: 29 RSSEEMA 35>NP_031397 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRSSEQMAS 9 SRSSE+ +S Sbjct: 440 SRSSEESSS 448>XP_005272271 Length = 725 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRSSEQMAS 9 SRSSE+ +S Sbjct: 440 SRSSEESSS 448>XP_006717354 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRSSEQMAS 9 SRSSE+ +S Sbjct: 440 SRSSEESSS 448Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.276 0.0834 0.166 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 249,139 Number of extensions: 156 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |