Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 509 NP_671714 20 509 XP_006715890 20 509 XP_005250160 20 509 XP_005250159 20 509 NP_037444 17 4312 NP_001093646 17 4312 XP_005259935 17 4312 XP_005259934 17 4312 XP_005259933 17 4312 XP_005259931 17 4312 XP_005259930 17 4312 NP_055625 16 5631 NP_078824 16 5631 XP_006716441 16 5631 XP_005247816 16 5631 XP_006713806 16 5631 XP_006711734 16 5631 XP_006711733 16 5631 XP_006711732 16 5631 XP_006711731 16 5631 XP_006711730 16 5631 XP_006711729 16 5631 XP_005245695 16 5631 NP_055453 15 9605 NP_001074961 15 9605 NP_872313 15 9605 NP_060827 15 9605 NP_001273608 15 9605 XP_006725014 15 9605 XP_006725013 15 9605 XP_006725012 15 9605 XP_005268732 15 9605 XP_006711118 15 9605 XP_006711117 15 9605>NP_005742 Length = 3907 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRQKESMKA 9 SRQKE+MKA Sbjct: 1977 SRQKEAMKA 1985>NP_671714 Length = 3899 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRQKESMKA 9 SRQKE+MKA Sbjct: 1977 SRQKEAMKA 1985>XP_006715890 Length = 3860 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRQKESMKA 9 SRQKE+MKA Sbjct: 1930 SRQKEAMKA 1938>XP_005250160 Length = 3939 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRQKESMKA 9 SRQKE+MKA Sbjct: 2009 SRQKEAMKA 2017>XP_005250159 Length = 3952 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SRQKESMKA 9 SRQKE+MKA Sbjct: 2009 SRQKEAMKA 2017>NP_037444 Length = 719 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 376 RQEEAMKA 383>NP_001093646 Length = 717 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 376 RQEEAMKA 383>XP_005259935 Length = 646 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 303 RQEEAMKA 310>XP_005259934 Length = 646 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 303 RQEEAMKA 310>XP_005259933 Length = 646 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 303 RQEEAMKA 310>XP_005259931 Length = 716 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 376 RQEEAMKA 383>XP_005259930 Length = 718 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RQKESMKA 9 RQ+E+MKA Sbjct: 376 RQEEAMKA 383>NP_055625 Length = 3117 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2078 RQKERLKA 2085>NP_078824 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QKESMKA 9 QKES+KA Sbjct: 240 QKESLKA 246>XP_006716441 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RQKESMK 8 R+KESMK Sbjct: 171 RKKESMK 177>XP_005247816 Length = 806 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QKESMKA 9 QKES+KA Sbjct: 240 QKESLKA 246>XP_006713806 Length = 831 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QKESMKA 9 QKES+KA Sbjct: 206 QKESLKA 212>XP_006711734 Length = 3136 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2097 RQKERLKA 2104>XP_006711733 Length = 3137 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2098 RQKERLKA 2105>XP_006711732 Length = 3154 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2115 RQKERLKA 2122>XP_006711731 Length = 3157 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2118 RQKERLKA 2125>XP_006711730 Length = 3157 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2118 RQKERLKA 2125>XP_006711729 Length = 3158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2119 RQKERLKA 2126>XP_005245695 Length = 3158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQKESMKA 9 RQKE +KA Sbjct: 2119 RQKERLKA 2126>NP_055453 Length = 1416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 614 TRQKKTMK 621>NP_001074961 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SRQKESMKA 9 +++KE MKA Sbjct: 81 NQEKEEMKA 89>NP_872313 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SRQKESMKA 9 +++KE MKA Sbjct: 81 NQEKEEMKA 89>NP_060827 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRQKESMKA 9 S+ KE+MKA Sbjct: 280 SQGKENMKA 288>NP_001273608 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRQKESMKA 9 S+ KE+MKA Sbjct: 96 SQGKENMKA 104>XP_006725014 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 587 TRQKKTMK 594>XP_006725013 Length = 1389 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 587 TRQKKTMK 594>XP_006725012 Length = 1388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 586 TRQKKTMK 593>XP_005268732 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SRQKESMKA 9 +++KE MKA Sbjct: 81 NQEKEEMKA 89>XP_006711118 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 587 TRQKKTMK 594>XP_006711117 Length = 1413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRQKESMK 8 +RQK++MK Sbjct: 611 TRQKKTMK 618Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.290 0.0969 0.209 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 484,750 Number of extensions: 733 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |