Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1935 XP_005262424 18 1935 XP_006722869 16 7355 XP_005272548 16 7355 NP_001033794 16 7355 NP_065953 16 7355 NP_001073898 16 7355 NP_001188477 15 9605 NP_001004482 15 9605 NP_001004481 15 9605>NP_722576 Length = 3080 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 SRKTMS ST Sbjct: 2127 SRKTMSPST 2135>XP_005262424 Length = 2875 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 SRKTMS ST Sbjct: 1922 SRKTMSPST 1930>XP_006722869 Length = 1260 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 S+ T+SLST Sbjct: 1057 SQSTLSLST 1065>XP_005272548 Length = 1265 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 S+ T+SLST Sbjct: 1062 SQSTLSLST 1070>NP_001033794 Length = 731 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KTMSLST 9 KT+SLST Sbjct: 566 KTLSLST 572>NP_065953 Length = 1249 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 S+ T+SLST Sbjct: 1046 SQSTLSLST 1054>NP_001073898 Length = 1276 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRKTMSLST 9 S+ T+SLST Sbjct: 1073 SQSTLSLST 1081>NP_001188477 Length = 382 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RKTMSLST 9 R TM+LST Sbjct: 350 RHTMALST 357>NP_001004482 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RKTMSLS 8 RKT+SLS Sbjct: 89 RKTISLS 95>NP_001004481 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RKTMSLS 8 RKT+SLS Sbjct: 89 RKTISLS 95Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.298 0.0990 0.217 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 283,130 Number of extensions: 278 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |