Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001121619 18 1482 NP_000258 18 1482 NP_001035957 18 1482 XP_006721991 18 1482 XP_006721990 18 1482 XP_006721989 18 1482 XP_005258041 18 1482 XP_006721988 18 1482 XP_006721987 18 1482 XP_006721986 18 1482 XP_005258040 18 1482 XP_006721985 18 1482 XP_005276195 16 5631 XP_005277559 16 5631 XP_006710144 16 5631 NP_000538 16 7355 NP_783653 16 7355 NP_006648 16 7355 NP_998770 16 7355 NP_996848 16 7355 XP_006724024 16 7355 XP_006716616 16 7355 XP_005264762 16 7355 XP_005264761 16 7355 XP_005264759 16 7355 XP_005264758 16 7355 XP_005264757 16 7355 XP_005264756 16 7355 XP_005264755 16 7355 NP_783652 16 7355 NP_001193674 16 7355 NP_783650 16 7355 NP_001193673 16 7355 NP_078801 15 9605 XP_006711877 15 9605 XP_005273321 15 9605 XP_005273318 15 9605 XP_005273317 15 9605>NP_001121619 Length = 593 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>NP_000258 Length = 2818 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>NP_001035957 Length = 2839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721991 Length = 1632 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721990 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721989 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_005258041 Length = 2836 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721988 Length = 2846 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721987 Length = 2849 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721986 Length = 2854 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 142 SRISTRLQE 150>XP_005258040 Length = 2857 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_006721985 Length = 2867 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 SRIST LQE Sbjct: 155 SRISTRLQE 163>XP_005276195 Length = 381 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 +R ST+LQE Sbjct: 123 ARYSTLLQE 131>XP_005277559 Length = 381 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 +R ST+LQE Sbjct: 123 ARYSTLLQE 131>XP_006710144 Length = 564 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SRISTMLQE 9 +R ST+LQE Sbjct: 123 ARYSTLLQE 131>NP_000538 Length = 933 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_783653 Length = 760 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_006648 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RISTMLQE 9 R+S++LQE Sbjct: 517 RVSSLLQE 524>NP_998770 Length = 492 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRISTMLQ 8 SR+ST++Q Sbjct: 462 SRLSTLIQ 469>NP_996848 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RISTMLQE 9 R+S++LQE Sbjct: 517 RVSSLLQE 524>XP_006724024 Length = 584 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RISTMLQE 9 R+S++LQE Sbjct: 560 RVSSLLQE 567>XP_006716616 Length = 492 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SRISTMLQ 8 SR+ST++Q Sbjct: 462 SRLSTLIQ 469>XP_005264762 Length = 495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264761 Length = 844 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264759 Length = 888 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264758 Length = 901 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264757 Length = 941 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264756 Length = 945 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>XP_005264755 Length = 947 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 49 SRVSSVLEE 57>NP_783652 Length = 889 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_001193674 Length = 876 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_783650 Length = 876 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_001193673 Length = 933 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SRISTMLQE 9 SR+S++L+E Sbjct: 37 SRVSSVLEE 45>NP_078801 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STMLQE 9 STMLQE Sbjct: 167 STMLQE 172>XP_006711877 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STMLQE 9 STMLQE Sbjct: 167 STMLQE 172>XP_005273321 Length = 784 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STMLQE 9 STMLQE Sbjct: 167 STMLQE 172>XP_005273318 Length = 829 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STMLQE 9 STMLQE Sbjct: 167 STMLQE 172>XP_005273317 Length = 859 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STMLQE 9 STMLQE Sbjct: 167 STMLQE 172Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.117 0.261 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 367,437 Number of extensions: 618 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |