Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 19 665 NP_004561 19 665 XP_005253450 19 665 XP_006719151 19 665 XP_006716433 17 2528 XP_005273633 17 2528 XP_006716432 17 2528 XP_005273632 17 2528 NP_112561 17 2528 XP_006722357 17 4312 XP_005268276 16 5631 NP_004265 16 5631 NP_597703 16 7355 NP_001263272 16 7355 NP_001138811 16 7355 NP_002383 16 7355 NP_001137472 16 7355 NP_001177739 16 7355 NP_001071153 16 7355 NP_001138809 16 7355 XP_005276439 16 7355 XP_005276438 16 7355 XP_006719463 16 7355 XP_006719462 16 7355 XP_005268929 16 7355 XP_006717918 16 7355 XP_006717917 16 7355 XP_006717916 16 7355 XP_005269893 16 7355 XP_005271857 16 7355 XP_006717684 16 7355 XP_006717682 16 7355 XP_005271854 16 7355 XP_006710000 16 7355 NP_001071133 16 7355 NP_003408 15 9605 NP_001018857 15 9605 XP_005259487 15 9605 XP_006723570 15 9605 NP_899231 15 9605>NP_001275701 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQVSLSFDQ 9 SQVSL FDQ Sbjct: 34 SQVSLGFDQ 42>NP_004561 Length = 1445 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQVSLSFDQ 9 SQVSL FDQ Sbjct: 34 SQVSLGFDQ 42>XP_005253450 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQVSLSFDQ 9 SQVSL FDQ Sbjct: 34 SQVSLGFDQ 42>XP_006719151 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQVSLSFDQ 9 SQVSL FDQ Sbjct: 34 SQVSLGFDQ 42>XP_006716433 Length = 3069 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 S++SLSFD Sbjct: 1132 SEISLSFD 1139>XP_005273633 Length = 3069 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 S++SLSFD Sbjct: 1132 SEISLSFD 1139>XP_006716432 Length = 3172 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 S++SLSFD Sbjct: 1235 SEISLSFD 1242>XP_005273632 Length = 3172 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 S++SLSFD Sbjct: 1235 SEISLSFD 1242>NP_112561 Length = 2789 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 S++SLSFD Sbjct: 852 SEISLSFD 859>XP_006722357 Length = 347 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 QVSLSFDQ 9 QVSLSF Q Sbjct: 55 QVSLSFPQ 62Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QVSLSFDQ 9 Q+SLSF Q Sbjct: 130 QISLSFPQ 137>XP_005268276 Length = 2320 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SQVSLSFD 8 SQVSLS D Sbjct: 295 SQVSLSVD 302>NP_004265 Length = 2319 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SQVSLSFD 8 SQVSLS D Sbjct: 295 SQVSLSVD 302>NP_597703 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001263272 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001138811 Length = 442 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 140 ISLSFDE 146>NP_002383 Length = 497 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 195 ISLSFDE 201>NP_001137472 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001177739 Length = 658 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001071153 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001138809 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 189 ISLSFDE 195>XP_005276439 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_005276438 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_006719463 Length = 390 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 88 ISLSFDE 94>XP_006719462 Length = 430 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 128 ISLSFDE 134>XP_005268929 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSLSFDQ 9 +SLSFD+ Sbjct: 189 ISLSFDE 195>XP_006717918 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_006717917 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_006717916 Length = 739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 66 VSLEFDQ 72>XP_005269893 Length = 739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 66 VSLEFDQ 72>XP_005271857 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_006717684 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>XP_006717682 Length = 716 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 66 VSLEFDQ 72>XP_005271854 Length = 739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 66 VSLEFDQ 72>XP_006710000 Length = 137 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_001071133 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSLSFDQ 9 VSL FDQ Sbjct: 13 VSLEFDQ 19>NP_003408 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 +QVS++FD Sbjct: 10 AQVSVTFD 17>NP_001018857 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 +QVS++FD Sbjct: 9 AQVSVTFD 16>XP_005259487 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 +QVS++FD Sbjct: 11 TQVSVTFD 18>XP_006723570 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQVSLSFD 8 +QVS++FD Sbjct: 10 AQVSVTFD 17>NP_899231 Length = 328 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QVSLSFD 8 QVSL FD Sbjct: 42 QVSLHFD 48Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.118 0.280 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 324,909 Number of extensions: 318 Number of successful extensions: 41 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |