Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005742                                                              20     509
NP_671714                                                              20     509
XP_006715890                                                           20     509
XP_005250160                                                           20     509
XP_005250159                                                           20     509
NP_001243779                                                           17    2528
NP_596869                                                              17    2528
XP_006712787                                                           17    2528
XP_006712786                                                           17    2528
NP_001254479                                                           17    2528
NP_758442                                                              17    3301
XP_005252703                                                           17    3301
XP_005252702                                                           17    3301
XP_006711677                                                           17    3301
NP_078845                                                              17    3301
NP_003944                                                              17    3301
NP_036575                                                              17    3301
NP_001240784                                                           17    3301
NP_002238                                                              16    5631
NP_001258448                                                           16    5631
NP_001154825                                                           16    5631
NP_001258447                                                           16    5631
NP_001154824                                                           16    5631
NP_001014797                                                           16    5631
XP_005269842                                                           16    5631
XP_005269838                                                           16    5631
XP_005269835                                                           16    5631
XP_005269837                                                           16    5631
XP_006717893                                                           16    5631
XP_005269844                                                           16    5631
XP_005269833                                                           16    5631
XP_006717891                                                           16    5631
XP_006717890                                                           16    5631
XP_005269854                                                           16    5631
XP_005269853                                                           16    5631
XP_005269852                                                           16    5631
XP_006717889                                                           16    5631
XP_005269849                                                           16    5631
XP_005269846                                                           16    5631
XP_006717888                                                           16    5631
XP_006717887                                                           16    5631
XP_006717886                                                           16    5631
XP_006717885                                                           16    5631
XP_006717884                                                           16    5631
XP_005269836                                                           16    5631
NP_001276089                                                           16    7355
NP_005922                                                              16    7355
NP_000238                                                              16    7355
NP_078796                                                              16    7355
XP_006726158                                                           16    7355
XP_006726065                                                           16    7355
NP_001276081                                                           15    9605
NP_001170990                                                           15    9605
NP_001276082                                                           15    9605
NP_060579                                                              15    9605
>NP_005742
          Length = 3907

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQ IETMQF
Sbjct: 675 SQKIETMQF 683
>NP_671714
          Length = 3899

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQ IETMQF
Sbjct: 675 SQKIETMQF 683
>XP_006715890
          Length = 3860

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQ IETMQF
Sbjct: 675 SQKIETMQF 683
>XP_005250160
          Length = 3939

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQ IETMQF
Sbjct: 675 SQKIETMQF 683
>XP_005250159
          Length = 3952

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQ IETMQF
Sbjct: 675 SQKIETMQF 683
>NP_001243779
          Length = 34350

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    SQNIETMQF 9
            S+NI T+QF
Sbjct: 8471 SENIATLQF 8479

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    QNIETMQF 9
            +N+ T+QF
Sbjct: 6590 ENVATLQF 6597
>NP_596869
          Length = 33423

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    SQNIETMQF 9
            S+NI T+QF
Sbjct: 7544 SENIATLQF 7552

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    QNIETMQF 9
            +N+ T+QF
Sbjct: 5663 ENVATLQF 5670
>XP_006712787
          Length = 33978

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    SQNIETMQF 9
            S+NI T+QF
Sbjct: 8472 SENIATLQF 8480

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    QNIETMQF 9
            +N+ T+QF
Sbjct: 6591 ENVATLQF 6598
>XP_006712786
          Length = 35484

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    SQNIETMQF 9
            S+NI T+QF
Sbjct: 8472 SENIATLQF 8480

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    QNIETMQF 9
            +N+ T+QF
Sbjct: 6591 ENVATLQF 6598
>NP_001254479
          Length = 35991

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    SQNIETMQF 9
            S+NI T+QF
Sbjct: 8788 SENIATLQF 8796

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    QNIETMQF 9
            +N+ T+QF
Sbjct: 6907 ENVATLQF 6914
>NP_758442
          Length = 458

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  QNIETMQ 8
          QNIET+Q
Sbjct: 32 QNIETLQ 38
>XP_005252703
          Length = 451

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  QNIETMQ 8
          QNIET+Q
Sbjct: 32 QNIETLQ 38
>XP_005252702
          Length = 506

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  QNIETMQ 8
          QNIET+Q
Sbjct: 32 QNIETLQ 38
>XP_006711677
          Length = 339

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1   SQNIETMQF 9
           S NIE MQF
Sbjct: 189 SINIENMQF 197
>NP_078845
          Length = 209

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1   SQNIETMQF 9
           S NIE MQF
Sbjct: 119 SINIENMQF 127
>NP_003944
          Length = 269

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1   SQNIETMQF 9
           S NIE MQF
Sbjct: 119 SINIENMQF 127
>NP_036575
          Length = 509

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  QNIETMQ 8
          QNIET+Q
Sbjct: 32 QNIETLQ 38
>NP_001240784
          Length = 484

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  QNIETMQ 8
          QNIET+Q
Sbjct: 10 QNIETLQ 16
>NP_002238
          Length = 1178

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>NP_001258448
          Length = 1208

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 892 SLNIKSMQF 900
>NP_001154825
          Length = 1219

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 930 SLNIKSMQF 938
>NP_001258447
          Length = 1128

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 839 SLNIKSMQF 847
>NP_001154824
          Length = 1236

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 947 SLNIKSMQF 955
>NP_001014797
          Length = 1182

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 893 SLNIKSMQF 901
>XP_005269842
          Length = 1234

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 893 SLNIKSMQF 901
>XP_005269838
          Length = 1236

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 947 SLNIKSMQF 955
>XP_005269835
          Length = 1239

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 951 SLNIKSMQF 959
>XP_005269837
          Length = 1243

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 954 SLNIKSMQF 962
>XP_006717893
          Length = 1233

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 918 SLNIKSMQF 926
>XP_005269844
          Length = 1230

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>XP_005269833
          Length = 1257

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>XP_006717891
          Length = 1143

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 827 SLNIKSMQF 835
>XP_006717890
          Length = 1145

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 829 SLNIKSMQF 837
>XP_005269854
          Length = 1177

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>XP_005269853
          Length = 1178

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>XP_005269852
          Length = 1181

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 893 SLNIKSMQF 901
>XP_006717889
          Length = 1205

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 889 SLNIKSMQF 897
>XP_005269849
          Length = 1207

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 918 SLNIKSMQF 926
>XP_005269846
          Length = 1209

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 893 SLNIKSMQF 901
>XP_006717888
          Length = 1210

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 922 SLNIKSMQF 930
>XP_006717887
          Length = 1211

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 922 SLNIKSMQF 930
>XP_006717886
          Length = 1234

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 918 SLNIKSMQF 926
>XP_006717885
          Length = 1237

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 922 SLNIKSMQF 930
>XP_006717884
          Length = 1238

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 922 SLNIKSMQF 930
>XP_005269836
          Length = 1238

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           S NI++MQF
Sbjct: 922 SLNIKSMQF 930
>NP_001276089
          Length = 351

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           SQN+ET +
Sbjct: 110 SQNLETQE 117
>NP_005922
          Length = 383

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           SQN+ET +
Sbjct: 142 SQNLETQE 149
>NP_000238
          Length = 383

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQN+ET ++
Sbjct: 142 SQNLETKEW 150
>NP_078796
          Length = 291

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           +QN+ET Q
Sbjct: 252 NQNVETKQ 259
>XP_006726158
          Length = 351

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           SQN+ET +
Sbjct: 110 SQNLETQE 117
>XP_006726065
          Length = 351

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           SQN+ET +
Sbjct: 110 SQNLETQE 117
>NP_001276081
          Length = 235

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  SQNIETMQF 9
          SQN+ET ++
Sbjct: 45 SQNLETEEW 53
>NP_001170990
          Length = 332

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   SQNIETMQF 9
           SQN+ET ++
Sbjct: 142 SQNLETEEW 150
>NP_001276082
          Length = 235

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  SQNIETMQF 9
          SQN+ET ++
Sbjct: 45 SQNLETEEW 53
>NP_060579
          Length = 582

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   SQNIETMQ 8
           SQN ET++
Sbjct: 431 SQNTETLE 438
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.314    0.119    0.298 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 350,221
Number of extensions: 435
Number of successful extensions: 60
Number of sequences better than 10000.0: 55
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 60
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)

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