Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 20 509 NP_001091680 20 509 NP_001091679 20 509 XP_006713048 20 509 XP_006713047 20 509 XP_006713046 20 509 XP_005264943 20 509 NP_001274103 18 1935 NP_000343 18 1935 XP_006718349 18 1935 NP_005088 16 5631 NP_005126 16 7355 NP_598408 16 7355 NP_001035959 16 7355 NP_001035962 16 7355 NP_001035960 16 7355 NP_001035961 16 7355 NP_694972 16 7355 NP_001258563 16 7355 NP_005435 16 7355 NP_001258564 16 7355 XP_006720856 16 7355 XP_006712895 16 7355 XP_005247000 16 7355 XP_005246999 16 7355 NP_060960 15 9605 NP_054644 15 9605 NP_000784 15 9605 NP_001007024 15 9605 NP_001229431 15 9605 NP_001136017 15 9605 NP_065154 15 9605 NP_001314 15 9605 NP_001229432 15 9605 XP_005267943 15 9605 XP_005267942 15 9605 XP_005268698 15 9605 NP_001004134 15 9605>NP_001895 Length = 781 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 129 SQMLKHAVV 137>NP_001091680 Length = 781 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 129 SQMLKHAVV 137>NP_001091679 Length = 781 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 129 SQMLKHAVV 137>XP_006713048 Length = 720 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 129 SQMLKHAVV 137>XP_006713047 Length = 774 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 122 SQMLKHAVV 130>XP_006713046 Length = 774 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 122 SQMLKHAVV 130>XP_005264943 Length = 781 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 SQMLKH VV Sbjct: 129 SQMLKHAVV 137>NP_001274103 Length = 1582 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SQMLKHVVV 9 SQ+LKH+V+ Sbjct: 1019 SQLLKHMVL 1027>NP_000343 Length = 1581 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SQMLKHVVV 9 SQ+LKH+V+ Sbjct: 1018 SQLLKHMVL 1026>XP_006718349 Length = 1646 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SQMLKHVVV 9 SQ+LKH+V+ Sbjct: 1018 SQLLKHMVL 1026>NP_005088 Length = 557 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMLKHVVV 9 +Q+ KHV+V Sbjct: 545 TQIYKHVIV 553>NP_005126 Length = 1099 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 947 SQMLRHM 953>NP_598408 Length = 1150 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 998 SQMLRHM 1004>NP_001035959 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 939 SQMLRHM 945>NP_001035962 Length = 1135 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 983 SQMLRHM 989>NP_001035960 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 939 SQMLRHM 945>NP_001035961 Length = 1141 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 989 SQMLRHM 995>NP_694972 Length = 1330 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SQMLKHV 7 SQM KHV Sbjct: 1230 SQMKKHV 1236>NP_001258563 Length = 331 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 258 ARLLKHVV 265>NP_005435 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 226 ARLLKHVV 233>NP_001258564 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 226 ARLLKHVV 233>XP_006720856 Length = 1101 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SQMLKHV 7 SQML+H+ Sbjct: 949 SQMLRHM 955>XP_006712895 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 173 ARLLKHVV 180>XP_005247000 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 228 ARLLKHVV 235>XP_005246999 Length = 301 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SQMLKHVV 8 +++LKHVV Sbjct: 228 ARLLKHVV 235>NP_060960 Length = 951 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SQMLKHV 7 S M+KHV Sbjct: 743 SSMIKHV 749>NP_054644 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MLKHVVV 9 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_000784 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MLKHVVV 9 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_001007024 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MLKHVVV 9 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_001229431 Length = 146 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MLKHVVV 9 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_001136017 Length = 455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SQMLKH 6 SQML+H Sbjct: 169 SQMLRH 174>NP_065154 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SQMLKH 6 SQML+H Sbjct: 237 SQMLRH 242>NP_001314 Length = 149 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SQMLKH 6 SQ+LKH Sbjct: 139 SQLLKH 144>NP_001229432 Length = 110 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MLKHVVV 9 +LKHVV+ Sbjct: 33 LLKHVVL 39>XP_005267943 Length = 457 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SQMLKH 6 SQML+H Sbjct: 237 SQMLRH 242>XP_005267942 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SQMLKH 6 SQML+H Sbjct: 237 SQMLRH 242>XP_005268698 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QMLKHVVV 9 QML H+VV Sbjct: 85 QMLIHLVV 92>NP_001004134 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QMLKHVVV 9 QML H+VV Sbjct: 81 QMLIHLVV 88Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.130 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 506,131 Number of extensions: 687 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |