Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055506 17 4312 XP_005259315 17 4312 XP_005259314 17 4312 NP_077297 17 4312 NP_001009899 16 5631 NP_438170 16 5631 NP_001229241 16 5631 NP_659456 16 5631 NP_001017981 16 5631 NP_077015 16 5631 XP_005247266 16 5631 XP_005247265 16 5631 NP_001244899 16 5631 NP_001157879 16 7355 XP_005257166 16 7355 XP_006721795 16 7355 XP_006721794 16 7355 NP_001137276 16 7355 NP_848595 16 7355 NP_001138578 15 9605 NP_116232 15 9605 NP_620411 15 9605 NP_064536 15 9605 XP_005271777 15 9605>NP_055506 Length = 1485 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SQMALRPVH 9 SQ+ RP+H Sbjct: 1321 SQLTARPLH 1329>XP_005259315 Length = 451 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 MALRP H Sbjct: 154 MALRPPH 160>XP_005259314 Length = 473 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 MALRP H Sbjct: 176 MALRPPH 182>NP_077297 Length = 480 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 MALRP H Sbjct: 183 MALRPPH 189>NP_001009899 Length = 2245 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMALRPVH 9 SQ++L+P H Sbjct: 1534 SQLSLQPKH 1542>NP_438170 Length = 434 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QMALRP 7 QMALRP Sbjct: 369 QMALRP 374>NP_001229241 Length = 546 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ALRPVH 9 A+RPVH Sbjct: 161 AIRPVH 166>NP_659456 Length = 582 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ALRPVH 9 A+RPVH Sbjct: 197 AIRPVH 202>NP_001017981 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SQMALRPV 8 SQ+ LRPV Sbjct: 171 SQLLLRPV 178>NP_077015 Length = 1004 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QMALRP 7 QMALRP Sbjct: 606 QMALRP 611>XP_005247266 Length = 2189 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMALRPVH 9 SQ++L+P H Sbjct: 1478 SQLSLQPKH 1486>XP_005247265 Length = 2211 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SQMALRPVH 9 SQ++L+P H Sbjct: 1500 SQLSLQPKH 1508>NP_001244899 Length = 740 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 QMALRP 7 QMALRP Sbjct: 606 QMALRP 611>NP_001157879 Length = 264 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 QMALRPVH 9 QMA P+H Sbjct: 65 QMAADPIH 72>XP_005257166 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 +ALRP H Sbjct: 158 LALRPFH 164>XP_006721795 Length = 350 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 +ALRP H Sbjct: 241 LALRPFH 247>XP_006721794 Length = 350 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 +ALRP H Sbjct: 241 LALRPFH 247>NP_001137276 Length = 292 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 +ALRP H Sbjct: 183 LALRPFH 189>NP_848595 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MALRPVH 9 +ALRP H Sbjct: 158 LALRPFH 164>NP_001138578 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SQMALRPV 8 S+M +RPV Sbjct: 450 SEMKIRPV 457>NP_116232 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SQMALRPV 8 S+M +RPV Sbjct: 450 SEMKIRPV 457>NP_620411 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SQMALRPVH 9 S ALRP H Sbjct: 315 SARALRPPH 323>NP_064536 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 SQMALRP 7 SQM +RP Sbjct: 269 SQMVIRP 275>XP_005271777 Length = 211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SQMALRPVH 9 S ALRP H Sbjct: 136 SARALRPPH 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.127 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 480,002 Number of extensions: 399 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |