Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 17 2528 NP_444254 17 2528 NP_444253 17 2528 NP_444255 17 2528 NP_001036009 17 2528 NP_001036010 17 2528 NP_003564 17 2528 XP_005247551 17 2528 XP_005247550 17 2528 XP_006713712 17 2528 XP_005247549 17 2528 NP_060379 16 7355 XP_006726484 15 9605 XP_006715006 15 9605 XP_006710234 15 9605>NP_444256 Length = 1794 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 391 SQDVVSKAA 399>NP_444254 Length = 1845 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 391 SQDVVSKAA 399>NP_444253 Length = 1914 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 391 SQDVVSKAA 399>NP_444255 Length = 1863 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 391 SQDVVSKAA 399>NP_001036009 Length = 1624 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQHVVSKA 8 SQHV+S+A Sbjct: 398 SQHVISEA 405>NP_001036010 Length = 1557 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQHVVSKA 8 SQHV+S+A Sbjct: 331 SQHVISEA 338>NP_003564 Length = 1587 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SQHVVSKA 8 SQHV+S+A Sbjct: 361 SQHVISEA 368>XP_005247551 Length = 1855 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 401 SQDVVSKAA 409>XP_005247550 Length = 1856 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 401 SQDVVSKAA 409>XP_006713712 Length = 1923 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 401 SQDVVSKAA 409>XP_005247549 Length = 1924 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SQHVVSKAA 9 SQ VVSKAA Sbjct: 401 SQDVVSKAA 409>NP_060379 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SQHVVSKA 8 S H++SKA Sbjct: 12 SHHILSKA 19>XP_006726484 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HVVSKA 8 H+VSKA Sbjct: 64 HIVSKA 69>XP_006715006 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HVVSKA 8 H+VSKA Sbjct: 64 HIVSKA 69>XP_006710234 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 HVVSKA 8 H+VSKA Sbjct: 64 HIVSKA 69Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.103 0.246 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 430,524 Number of extensions: 261 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |