Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 19 665 NP_996844 19 869 XP_005254439 19 869 XP_006720568 19 869 XP_005254438 19 869 NP_002335 19 869 NP_001128668 17 4312 XP_006717666 17 4312 XP_005269535 17 4312 XP_006717665 17 4312 XP_005269533 17 4312 XP_005269534 17 4312 NP_001034200 16 5631 NP_056537 16 7355 NP_055898 16 7355 NP_057591 16 7355 XP_006723058 16 7355 XP_005257515 16 7355 XP_005257513 16 7355 XP_005252742 16 7355 NP_001073903 16 7355 NP_001258825 15 9605 NP_001258824 15 9605 NP_079426 15 9605 XP_006711619 15 9605 XP_006711618 15 9605 NP_055714 15 9605>NP_004295 Length = 1620 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV VKT Sbjct: 1143 SPLQVAVKT 1151>NP_996844 Length = 803 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV +KT Sbjct: 476 SPLQVAIKT 484>XP_005254439 Length = 475 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV +KT Sbjct: 148 SPLQVAIKT 156>XP_006720568 Length = 771 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV +KT Sbjct: 444 SPLQVAIKT 452>XP_005254438 Length = 819 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV +KT Sbjct: 492 SPLQVAIKT 500>NP_002335 Length = 864 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SPLQV +KT Sbjct: 537 SPLQVAIKT 545>NP_001128668 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1291 PLQVKIKT 1298>XP_006717666 Length = 1289 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1145 PLQVKIKT 1152>XP_005269535 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1291 PLQVKIKT 1298>XP_006717665 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1291 PLQVKIKT 1298>XP_005269533 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1291 PLQVKIKT 1298>XP_005269534 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 PLQV +KT Sbjct: 1291 PLQVKIKT 1298>NP_001034200 Length = 868 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SPLQVVVKT 9 SP +VVVK+ Sbjct: 574 SPFKVVVKS 582>NP_056537 Length = 217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P QVV+KT Sbjct: 43 PDQVVIKT 50>NP_055898 Length = 1481 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P+QV VKT Sbjct: 604 PVQVSVKT 611>NP_057591 Length = 1490 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P+QV VKT Sbjct: 604 PVQVSVKT 611>XP_006723058 Length = 1460 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SPLQVVVK 8 +P QVVVK Sbjct: 157 TPAQVVVK 164>XP_005257515 Length = 1256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P+QV VKT Sbjct: 604 PVQVSVKT 611>XP_005257513 Length = 1489 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P+QV VKT Sbjct: 603 PVQVSVKT 610>XP_005252742 Length = 217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLQVVVKT 9 P QVV+KT Sbjct: 43 PDQVVIKT 50>NP_001073903 Length = 1489 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SPLQVVVK 8 +P QVVVK Sbjct: 186 TPAQVVVK 193>NP_001258825 Length = 588 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SPLQVVV 7 SP QVVV Sbjct: 482 SPFQVVV 488>NP_001258824 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SPLQVVV 7 SP QVVV Sbjct: 530 SPFQVVV 536>NP_079426 Length = 718 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SPLQVVV 7 SP QVVV Sbjct: 612 SPFQVVV 618>XP_006711619 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SPLQVVV 7 SP QVVV Sbjct: 563 SPFQVVV 569>XP_006711618 Length = 684 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SPLQVVV 7 SP QVVV Sbjct: 578 SPFQVVV 584>NP_055714 Length = 611 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLQVVVK 8 PL+V+VK Sbjct: 326 PLRVIVK 332Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.125 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 479,977 Number of extensions: 657 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |