Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 19 665 XP_006713721 19 665 XP_006712077 17 4312 XP_006712076 17 4312 XP_006712075 17 4312 XP_006712074 17 4312 XP_006712073 17 4312 XP_006712072 17 4312 XP_006712071 17 4312 NP_079334 16 5631 NP_001243529 16 5631 NP_001269307 16 5631 NP_001243528 16 5631 NP_001243530 16 5631 NP_001070884 16 7355 NP_001073896 15 9605 NP_001075956 15 9605 NP_000102 15 9605 NP_075065 15 9605 XP_005256172 15 9605 XP_006715936 15 9605 XP_005263859 15 9605 NP_001075955 15 9605 NP_057558 15 9605>NP_006209 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SNAGLSNRL 9 S+AGLSNRL Sbjct: 509 SHAGLSNRL 517>XP_006713721 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SNAGLSNRL 9 S+AGLSNRL Sbjct: 509 SHAGLSNRL 517>XP_006712077 Length = 241 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 228 SNSGVSGRL 236>XP_006712076 Length = 280 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 267 SNSGVSGRL 275>XP_006712075 Length = 325 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 312 SNSGVSGRL 320>XP_006712074 Length = 325 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 312 SNSGVSGRL 320>XP_006712073 Length = 326 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 313 SNSGVSGRL 321>XP_006712072 Length = 370 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 357 SNSGVSGRL 365>XP_006712071 Length = 371 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SNAGLSNRL 9 SN+G+S RL Sbjct: 358 SNSGVSGRL 366>NP_079334 Length = 759 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SNAGLSNR 8 SNAGL+ R Sbjct: 669 SNAGLTGR 676>NP_001243529 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SNAGLSNR 8 SNAGL+ R Sbjct: 627 SNAGLTGR 634>NP_001269307 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SNAGLSNR 8 SNAGL+ R Sbjct: 543 SNAGLTGR 550>NP_001243528 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SNAGLSNR 8 SNAGL+ R Sbjct: 646 SNAGLTGR 653>NP_001243530 Length = 746 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SNAGLSNR 8 SNAGL+ R Sbjct: 656 SNAGLTGR 663>NP_001070884 Length = 369 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SNAGLSNRL 9 + AGL NRL Sbjct: 84 ARAGLPNRL 92>NP_001073896 Length = 1577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SNAGLSNR 8 SN G SNR Sbjct: 48 SNCGESNR 55>NP_001075956 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SNAGLS 6 SNAGLS Sbjct: 245 SNAGLS 250>NP_000102 Length = 764 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SNAGLSNRL 9 +N GL NR+ Sbjct: 747 TNGGLRNRV 755>NP_075065 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SNAGLS 6 SNAGLS Sbjct: 245 SNAGLS 250>XP_005256172 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SNAGLS 6 SNAGLS Sbjct: 248 SNAGLS 253>XP_006715936 Length = 764 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SNAGLSNRL 9 +N GL NR+ Sbjct: 747 TNGGLRNRV 755>XP_005263859 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 SNAGLSNR 8 SN G SNR Sbjct: 79 SNCGESNR 86>NP_001075955 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SNAGLS 6 SNAGLS Sbjct: 248 SNAGLS 253>NP_057558 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NAGLSNR 8 N G+SNR Sbjct: 58 NVGVSNR 64Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.120 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 449,707 Number of extensions: 483 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |