Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 20 299 NP_036462 20 299 NP_001243397 20 299 XP_005269721 20 299 NP_001092882 18 1935 NP_006757 18 1935 NP_001092883 18 1935 XP_005273706 18 1935 NP_001094891 17 2528 NP_001106819 17 3301 NP_001106820 17 3301 NP_001388 17 3301 NP_001106818 17 3301 NP_055455 17 3301 NP_002527 17 3301 XP_005247035 17 3301 XP_006712939 17 3301 XP_006712938 17 3301 XP_006712937 17 3301 XP_006712936 17 3301 XP_005247034 17 3301 XP_006710461 17 3301 NP_000247 16 7355 NP_055573 16 7355 NP_071733 16 7355 XP_005271606 16 7355 XP_005271605 16 7355 XP_005274110 16 7355 XP_006718301 16 7355 NP_004121 15 9605 NP_001171649 15 9605 NP_055888 15 9605 NP_055749 15 9605 XP_005258729 15 9605 XP_005258728 15 9605>NP_001243398 Length = 1781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSQPMVNS 9 SMSQPM+NS Sbjct: 1704 SMSQPMMNS 1712>NP_036462 Length = 2073 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSQPMVNS 9 SMSQPM+NS Sbjct: 1996 SMSQPMMNS 2004>NP_001243397 Length = 1890 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSQPMVNS 9 SMSQPM+NS Sbjct: 1813 SMSQPMMNS 1821>XP_005269721 Length = 2073 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSQPMVNS 9 SMSQPM+NS Sbjct: 1996 SMSQPMMNS 2004>NP_001092882 Length = 2004 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MSQPMVNS 9 M+QPM+NS Sbjct: 1927 MTQPMMNS 1934>NP_006757 Length = 2004 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MSQPMVNS 9 M+QPM+NS Sbjct: 1927 MTQPMMNS 1934>NP_001092883 Length = 2004 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MSQPMVNS 9 M+QPM+NS Sbjct: 1927 MTQPMMNS 1934>XP_005273706 Length = 1997 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MSQPMVNS 9 M+QPM+NS Sbjct: 1920 MTQPMMNS 1927>NP_001094891 Length = 1022 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 S++QP VNS Sbjct: 851 SLNQPFVNS 859>NP_001106819 Length = 754 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+ PMVN+ Sbjct: 543 SMTPPMVNA 551>NP_001106820 Length = 767 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+ PMVN+ Sbjct: 556 SMTPPMVNA 564>NP_001388 Length = 770 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+ PMVN+ Sbjct: 559 SMTPPMVNA 567>NP_001106818 Length = 758 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+ PMVN+ Sbjct: 547 SMTPPMVNA 555>NP_055455 Length = 1199 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>NP_002527 Length = 688 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SMSQPMVNS 9 S+S+P++NS Sbjct: 538 SLSEPLLNS 546>XP_005247035 Length = 971 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_006712939 Length = 972 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_006712938 Length = 1138 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_006712937 Length = 1199 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_006712936 Length = 1199 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_005247034 Length = 1199 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+QPM +S Sbjct: 169 SMAQPMASS 177>XP_006710461 Length = 753 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 SM+ PMVN+ Sbjct: 542 SMTPPMVNA 550>NP_000247 Length = 1274 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSQPMVN 8 S +QP+VN Sbjct: 1182 SFTQPLVN 1189>NP_055573 Length = 992 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SMSQPMVN 8 S+ QP++N Sbjct: 941 SLQQPLIN 948>NP_071733 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 S+ QP+VN+ Sbjct: 261 SVDQPVVNT 269>XP_005271606 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SMSQPMVN 8 S+ QP++N Sbjct: 321 SLQQPLIN 328>XP_005271605 Length = 417 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 SMSQPMVN 8 S+ QP++N Sbjct: 366 SLQQPLIN 373>XP_005274110 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 S+ QP+VN+ Sbjct: 261 SVDQPVVNT 269>XP_006718301 Length = 1268 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSQPMVN 8 S +QP+VN Sbjct: 1176 SFTQPLVN 1183>NP_004121 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 +M+QP V+S Sbjct: 310 AMAQPFVSS 318>NP_001171649 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 +M+QP V+S Sbjct: 293 AMAQPFVSS 301>NP_055888 Length = 1781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SMSQPMVNS 9 SMSQP+ S Sbjct: 45 SMSQPLGES 53>NP_055749 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSQPMVNS 9 S+S+P VN+ Sbjct: 449 SISEPKVNA 457>XP_005258729 Length = 1780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SMSQPMVNS 9 SMSQP+ S Sbjct: 45 SMSQPLGES 53>XP_005258728 Length = 1781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SMSQPMVNS 9 SMSQP+ S Sbjct: 45 SMSQPLGES 53Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.102 0.254 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 565,216 Number of extensions: 645 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |