Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 21 229 NP_036462 21 229 NP_001243397 21 229 XP_005269721 21 229 NP_110436 17 4312 XP_006719685 17 4312 XP_006719684 17 4312 NP_077719 16 5631 XP_005270959 16 5631 XP_005270958 16 5631 XP_006710730 16 5631 NP_149162 16 7355 NP_001835 16 7355 NP_005547 16 7355 NP_056155 16 7355 XP_006719305 16 7355 XP_005265063 16 7355 NP_000758 15 9605 NP_000386 15 9605 NP_001193665 15 9605 NP_061327 15 9605 NP_057227 15 9605 NP_036392 15 9605 NP_001074319 15 9605 NP_001271342 15 9605 NP_001271345 15 9605 NP_001271344 15 9605 NP_001193856 15 9605 XP_005261397 15 9605 XP_006723657 15 9605 XP_006723656 15 9605 XP_006723655 15 9605 XP_006723654 15 9605 XP_006723114 15 9605 XP_005258626 15 9605 XP_006723113 15 9605 XP_006715067 15 9605 XP_006714215 15 9605 XP_006714214 15 9605 XP_005262915 15 9605 NP_055806 15 9605>NP_001243398 Length = 1781 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 SM+AFTGRG Sbjct: 362 SMNAFTGRG 370>NP_036462 Length = 2073 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 SM+AFTGRG Sbjct: 362 SMNAFTGRG 370>NP_001243397 Length = 1890 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 SM+AFTGRG Sbjct: 362 SMNAFTGRG 370>XP_005269721 Length = 2073 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 SM+AFTGRG Sbjct: 362 SMNAFTGRG 370>NP_110436 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 M AFTG G Sbjct: 1 MDAFTGSG 8>XP_006719685 Length = 272 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 M AFTG G Sbjct: 1 MDAFTGSG 8>XP_006719684 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 M AFTG G Sbjct: 1 MDAFTGSG 8>NP_077719 Length = 2471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SAFTGR 8 SAFTGR Sbjct: 1294 SAFTGR 1299>XP_005270959 Length = 2432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SAFTGR 8 SAFTGR Sbjct: 1255 SAFTGR 1260>XP_005270958 Length = 2432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SAFTGR 8 SAFTGR Sbjct: 1255 SAFTGR 1260>XP_006710730 Length = 2432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SAFTGR 8 SAFTGR Sbjct: 1255 SAFTGR 1260>NP_149162 Length = 1418 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 MSAF G G Sbjct: 1151 MSAFAGLG 1158>NP_001835 Length = 1487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 MSAF G G Sbjct: 1220 MSAFAGLG 1227>NP_005547 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SAFTGRG 9 +AF+GRG Sbjct: 15 AAFSGRG 21>NP_056155 Length = 903 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 ++++FTG+G Sbjct: 483 NIASFTGKG 491>XP_006719305 Length = 1488 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 MSAFTGRG 9 MSAF G G Sbjct: 1221 MSAFAGLG 1228>XP_005265063 Length = 903 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SMSAFTGRG 9 ++++FTG+G Sbjct: 483 NIASFTGKG 491>NP_000758 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFTGRG 9 AF+GRG Sbjct: 94 AFSGRG 99>NP_000386 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SMSAFT 6 SMSAFT Sbjct: 499 SMSAFT 504>NP_001193665 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 251 AFKAFTGEG 259>NP_061327 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 218 AFKAFTGEG 226>NP_057227 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 249 AFKAFTGEG 257>NP_036392 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSAFTGRG 9 M+AF G+G Sbjct: 522 MTAFGGKG 529>NP_001074319 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMSAFTGRG 9 S S+F+G+G Sbjct: 711 SNSSFSGKG 719>NP_001271342 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSAFTGRG 9 M+AF G+G Sbjct: 495 MTAFGGKG 502>NP_001271345 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSAFTGRG 9 M+AF G+G Sbjct: 440 MTAFGGKG 447>NP_001271344 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MSAFTGRG 9 M+AF G+G Sbjct: 462 MTAFGGKG 469>NP_001193856 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SMSAFTGRG 9 S +AF G+G Sbjct: 1644 SFAAFKGKG 1652>XP_005261397 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SMSAFT 6 SMSAFT Sbjct: 505 SMSAFT 510>XP_006723657 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 138 AFKAFTGEG 146>XP_006723656 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 140 AFKAFTGEG 148>XP_006723655 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 140 AFKAFTGEG 148>XP_006723654 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 SMSAFTGRG 9 + AFTG G Sbjct: 164 AFKAFTGEG 172>XP_006723114 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFTGRG 9 AF+GRG Sbjct: 94 AFSGRG 99>XP_005258626 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFTGRG 9 AF+GRG Sbjct: 94 AFSGRG 99>XP_006723113 Length = 457 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AFTGRG 9 AF+GRG Sbjct: 94 AFSGRG 99>XP_006715067 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SMSAFTGRG 9 S +AF G+G Sbjct: 1644 SFAAFKGKG 1652>XP_006714215 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSAFTGR 8 S++ FTGR Sbjct: 3222 SVNTFTGR 3229>XP_006714214 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSAFTGR 8 S++ FTGR Sbjct: 3222 SVNTFTGR 3229>XP_005262915 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSAFTGR 8 S++ FTGR Sbjct: 3222 SVNTFTGR 3229>NP_055806 Length = 3526 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMSAFTGR 8 S++ FTGR Sbjct: 3204 SVNTFTGR 3211Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.126 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 523,391 Number of extensions: 439 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |