Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_859075 18 1935 XP_006719432 18 1935 XP_006719431 18 1935 NP_001191675 17 2528 NP_001191674 17 2528 NP_001191673 17 2528 NP_004053 17 2528 XP_005255827 17 2528 XP_005255826 17 2528 XP_005255825 17 2528 NP_001258463 16 7355 NP_001380 16 7355 NP_116098 16 7355 XP_006724038 16 7355 XP_006718108 16 7355 NP_114414 16 7355 NP_116250 15 9605 NP_776188 15 9605 NP_001161302 15 9605 NP_057124 15 9605 XP_006715649 15 9605 XP_006715648 15 9605 XP_005265737 15 9605 XP_005265736 15 9605>NP_859075 Length = 283 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SMPLKATIL 9 S+PLKAT L Sbjct: 27 SVPLKATFL 35>XP_006719432 Length = 283 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SMPLKATIL 9 S+PLKAT L Sbjct: 27 SVPLKATFL 35>XP_006719431 Length = 283 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SMPLKATIL 9 S+PLKAT L Sbjct: 27 SVPLKATFL 35>NP_001191675 Length = 732 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 725 SVPLKATV 732>NP_001191674 Length = 790 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 783 SVPLKATV 790>NP_001191673 Length = 807 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 800 SVPLKATV 807>NP_004053 Length = 829 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 822 SVPLKATV 829>XP_005255827 Length = 651 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 644 SVPLKATV 651>XP_005255826 Length = 766 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 759 SVPLKATV 766>XP_005255825 Length = 829 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SMPLKATI 8 S+PLKAT+ Sbjct: 822 SVPLKATV 829>NP_001258463 Length = 1994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 PLKATI 8 PLKATI Sbjct: 313 PLKATI 318>NP_001380 Length = 2012 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 PLKATI 8 PLKATI Sbjct: 313 PLKATI 318>NP_116098 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SMPLKATI 8 S PLKAT+ Sbjct: 237 SEPLKATL 244>XP_006724038 Length = 1907 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 PLKATI 8 PLKATI Sbjct: 208 PLKATI 213>XP_006718108 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SMPLKATI 8 S PLKAT+ Sbjct: 237 SEPLKATL 244>NP_114414 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 MPLKATI 8 MP KATI Sbjct: 295 MPAKATI 301>NP_116250 Length = 654 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SMPLKATIL 9 S P+KA +L Sbjct: 389 SQPIKADVL 397>NP_776188 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PLKATIL 9 P KAT+L Sbjct: 167 PFKATVL 173>NP_001161302 Length = 193 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MPLKATI 8 MPLKA++ Sbjct: 52 MPLKASL 58>NP_057124 Length = 229 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MPLKATI 8 MPLKA++ Sbjct: 52 MPLKASL 58>XP_006715649 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SMPLKATIL 9 S P+KA +L Sbjct: 319 SQPIKADVL 327>XP_006715648 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SMPLKATIL 9 S P+KA +L Sbjct: 351 SQPIKADVL 359>XP_005265737 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PLKATIL 9 P KAT+L Sbjct: 167 PFKATVL 173>XP_005265736 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PLKATIL 9 P KAT+L Sbjct: 167 PFKATVL 173Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.130 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 496,650 Number of extensions: 806 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |