Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 17 2528 NP_444254 17 2528 NP_444253 17 2528 NP_444255 17 2528 XP_005247551 17 2528 XP_005247550 17 2528 XP_006713712 17 2528 XP_005247549 17 2528 NP_000171 16 5631 NP_444260 16 7355 NP_444259 16 7355 NP_005493 16 7355 NP_001243624 16 7355 XP_006726338 16 7355 XP_005251835 16 7355 XP_006717058 16 7355 XP_005251833 16 7355 XP_005251831 16 7355 XP_005251830 16 7355 NP_004377 15 9605 NP_001191790 15 9605 NP_001191791 15 9605 NP_001191788 15 9605 NP_005639 15 9605 NP_001191792 15 9605 NP_001191789 15 9605 NP_001191787 15 9605 NP_001191793 15 9605 NP_001191786 15 9605 XP_005259803 15 9605 XP_005259802 15 9605 XP_005251347 15 9605 XP_005270977 15 9605 XP_001718723 15 9605 NP_057575 15 9605>NP_444256 Length = 1794 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1640 SMAMISGLS 1648>NP_444254 Length = 1845 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1691 SMAMISGLS 1699>NP_444253 Length = 1914 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1760 SMAMISGLS 1768>NP_444255 Length = 1863 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1709 SMAMISGLS 1717>XP_005247551 Length = 1855 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1701 SMAMISGLS 1709>XP_005247550 Length = 1856 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1702 SMAMISGLS 1710>XP_006713712 Length = 1923 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1770 SMAMISGLS 1778>XP_005247549 Length = 1924 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 SMAMISG S Sbjct: 1770 SMAMISGLS 1778>NP_000171 Length = 1103 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MAMISGPS 9 M M+SGP+ Sbjct: 494 MQMVSGPN 501>NP_444260 Length = 154 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MAMISGPS 9 MAMISG S Sbjct: 1 MAMISGLS 8>NP_444259 Length = 153 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MAMISGPS 9 MAMISG S Sbjct: 1 MAMISGLS 8>NP_005493 Length = 2261 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 2056 AMALIGGP 2063>NP_001243624 Length = 1177 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SMAMISGPS 9 S +M+SGP+ Sbjct: 458 SESMVSGPA 466>XP_006726338 Length = 481 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MISGPS 9 M+SGPS Sbjct: 417 MVSGPS 422>XP_005251835 Length = 2074 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 2058 AMALIGGP 2065>XP_006717058 Length = 2100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 2058 AMALIGGP 2065>XP_005251833 Length = 2203 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 1998 AMALIGGP 2005>XP_005251831 Length = 2263 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 2058 AMALIGGP 2065>XP_005251830 Length = 2263 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SMAMISGP 8 +MA+I GP Sbjct: 2058 AMALIGGP 2065>NP_004377 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MAMISGP 8 MAM+ GP Sbjct: 633 MAMLRGP 639>NP_001191790 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_001191791 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_001191788 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_005639 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_001191792 Length = 96 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 28 AMLSGP 33>NP_001191789 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_001191787 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>NP_001191793 Length = 96 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 28 AMLSGP 33>NP_001191786 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>XP_005259803 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MAMISGP 8 MAM+ GP Sbjct: 633 MAMLRGP 639>XP_005259802 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MAMISGP 8 MAM+ GP Sbjct: 633 MAMLRGP 639>XP_005251347 Length = 112 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AMISGP 8 AM+SGP Sbjct: 44 AMLSGP 49>XP_005270977 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MAMISGPS 9 MA+ SGP+ Sbjct: 1 MALASGPA 8>XP_001718723 Length = 1091 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AMISGPS 9 AMIS PS Sbjct: 208 AMISSPS 214>NP_057575 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MAMISGPS 9 MA+ SGP+ Sbjct: 1 MALASGPA 8Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.114 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 642,356 Number of extensions: 320 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |