Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_057323 17 4312 XP_005256732 17 4312 NP_001139017 17 4312 NP_001273479 16 5631 NP_733751 16 7355 XP_006716142 16 7355 XP_005250088 16 7355 XP_006716141 16 7355 XP_005250085 16 7355 XP_006716140 16 7355 XP_005250084 16 7355 XP_005250083 16 7355 XP_005250082 16 7355 XP_006715469 16 7355 XP_005266931 16 7355 NP_055928 15 9605 NP_003382 15 9605 NP_113621 15 9605 NP_853514 15 9605 NP_055616 15 9605 XP_005256618 15 9605 XP_005256617 15 9605 XP_006716172 15 9605 XP_006711879 15 9605 XP_005273329 15 9605>NP_057323 Length = 3530 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLVSSHRQ 8 +LVS HRQ Sbjct: 3383 NLVSQHRQ 3390>XP_005256732 Length = 3531 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLVSSHRQ 8 +LVS HRQ Sbjct: 3384 NLVSQHRQ 3391>NP_001139017 Length = 154 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLVSSHRQM 9 SLV SHR++ Sbjct: 101 SLVGSHRRV 109>NP_001273479 Length = 153 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLVSSHRQ 8 SLVS+H Q Sbjct: 90 SLVSAHNQ 97>NP_733751 Length = 4911 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4126 LVSSHR 4131>XP_006716142 Length = 4927 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4142 LVSSHR 4147>XP_005250088 Length = 4928 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4143 LVSSHR 4148>XP_006716141 Length = 4959 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4174 LVSSHR 4179>XP_005250085 Length = 4979 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4198 LVSSHR 4203>XP_006716140 Length = 4982 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4197 LVSSHR 4202>XP_005250084 Length = 4982 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4197 LVSSHR 4202>XP_005250083 Length = 4982 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4197 LVSSHR 4202>XP_005250082 Length = 4983 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LVSSHR 7 LVSSHR Sbjct: 4198 LVSSHR 4203>XP_006715469 Length = 1235 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLVSSHRQ 8 SL+SSH++ Sbjct: 71 SLISSHQR 78>XP_005266931 Length = 1283 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLVSSHRQ 8 SL+SSH++ Sbjct: 119 SLISSHQR 126>NP_055928 Length = 2961 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SLVSSHR 7 SLVS HR Sbjct: 71 SLVSRHR 77>NP_003382 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSSHRQM 9 LVSS RQ+ Sbjct: 47 LVSSQRQL 54>NP_113621 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LVSSHRQM 9 LVSSH ++ Sbjct: 385 LVSSHHEL 392>NP_853514 Length = 1732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLVSSH 6 SLVSSH Sbjct: 1042 SLVSSH 1047>NP_055616 Length = 2137 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LVSSHRQM 9 L+S+HR++ Sbjct: 1210 LISNHRRL 1217>XP_005256618 Length = 2962 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SLVSSHR 7 SLVS HR Sbjct: 71 SLVSRHR 77>XP_005256617 Length = 2966 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SLVSSHR 7 SLVS HR Sbjct: 71 SLVSRHR 77>XP_006716172 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSSHRQM 9 LVSS RQ+ Sbjct: 18 LVSSQRQL 25>XP_006711879 Length = 1364 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LVSSHRQM 9 L+S+HR++ Sbjct: 1210 LISNHRRL 1217>XP_005273329 Length = 1934 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LVSSHRQM 9 L+S+HR++ Sbjct: 1007 LISNHRRL 1014Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.113 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 571,138 Number of extensions: 786 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |