Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 17 3301 XP_005269721 17 3301 NP_056385 17 4312 NP_001120703 17 4312 NP_001277155 16 7355 NP_001277156 16 7355 NP_055998 16 7355 NP_001158136 16 7355 XP_006714675 16 7355 XP_006714673 16 7355 XP_006714672 16 7355 XP_006714670 16 7355 XP_006714669 16 7355 XP_006714668 16 7355 XP_006714667 16 7355 XP_006714666 16 7355 XP_005248555 16 7355 XP_006714665 16 7355 NP_001275661 15 9605 NP_060939 15 9605 NP_060102 15 9605 NP_001275662 15 9605 XP_005257564 15 9605>NP_036462 Length = 2073 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 S SSQKSST Sbjct: 504 SPSSQKSST 512>XP_005269721 Length = 2073 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 S SSQKSST Sbjct: 504 SPSSQKSST 512>NP_056385 Length = 1259 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLSS +SST Sbjct: 403 SLSSSRSST 411>NP_001120703 Length = 1235 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLSS +SST Sbjct: 403 SLSSSRSST 411>NP_001277155 Length = 2417 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2005 SLSSQKPS 2012>NP_001277156 Length = 2362 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 1950 SLSSQKPS 1957>NP_055998 Length = 2434 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2022 SLSSQKPS 2029>NP_001158136 Length = 2623 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2211 SLSSQKPS 2218>XP_006714675 Length = 2275 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 1863 SLSSQKPS 1870>XP_006714673 Length = 2362 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 1950 SLSSQKPS 1957>XP_006714672 Length = 2414 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2002 SLSSQKPS 2009>XP_006714670 Length = 2425 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2013 SLSSQKPS 2020>XP_006714669 Length = 2429 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2017 SLSSQKPS 2024>XP_006714668 Length = 2429 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2017 SLSSQKPS 2024>XP_006714667 Length = 2432 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2020 SLSSQKPS 2027>XP_006714666 Length = 2432 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2020 SLSSQKPS 2027>XP_005248555 Length = 2626 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2214 SLSSQKPS 2221>XP_006714665 Length = 2651 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSSQKSS 8 SLSSQK S Sbjct: 2239 SLSSQKPS 2246>NP_001275661 Length = 1127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLS QK+S+ Sbjct: 152 SLSEQKTSS 160>NP_060939 Length = 1134 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLS QK+S+ Sbjct: 152 SLSEQKTSS 160>NP_060102 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSQKSST 9 +SSQ SST Sbjct: 196 ISSQNSST 203>NP_001275662 Length = 1127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLS QK+S+ Sbjct: 152 SLSEQKTSS 160>XP_005257564 Length = 1125 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSSQKSST 9 SLS QK+S+ Sbjct: 152 SLSEQKTSS 160Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.260 0.0769 0.147 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 256,306 Number of extensions: 295 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 19 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |