Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_001138462 17 3301 NP_001257452 16 5631 NP_001257453 16 5631 NP_758840 16 5631 NP_068374 16 5631 NP_001257454 16 5631 NP_001248348 16 7355 NP_004624 16 7355 NP_056028 16 7355 NP_001230183 16 7355 XP_006718232 16 7355 XP_005252889 16 7355 XP_006712799 16 7355 XP_006712798 16 7355 XP_006712797 16 7355 XP_006712796 16 7355 NP_001018098 15 9605 NP_060154 15 9605 NP_060550 15 9605 NP_060542 15 9605 NP_065872 15 9605 NP_057381 15 9605 NP_001092882 15 9605 NP_006757 15 9605 NP_001092883 15 9605 NP_056128 15 9605 NP_001185594 15 9605 NP_849143 15 9605 NP_001020260 15 9605 NP_001020259 15 9605 NP_001020258 15 9605 NP_064565 15 9605 NP_004834 15 9605 XP_006722571 15 9605 XP_006722570 15 9605 XP_006722569 15 9605 XP_006722568 15 9605 XP_005258365 15 9605 XP_006722567 15 9605 XP_005271537 15 9605 XP_005271535 15 9605 XP_006718868 15 9605 XP_005273706 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLSLSTSGL 9 SLSLST+GL Sbjct: 1465 SLSLSTAGL 1473>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLSLSTSGL 9 SLSLST+GL Sbjct: 1260 SLSLSTAGL 1268>NP_001138462 Length = 1742 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSLSTSG+ Sbjct: 1290 LSLSTSGV 1297>NP_001257452 Length = 289 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSL+TSG+ Sbjct: 15 LSLTTSGM 22>NP_001257453 Length = 289 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSL+TSG+ Sbjct: 15 LSLTTSGM 22>NP_758840 Length = 289 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSL+TSG+ Sbjct: 15 LSLTTSGM 22>NP_068374 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSL+TSG+ Sbjct: 15 LSLTTSGM 22>NP_001257454 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 LSL+TSG+ Sbjct: 15 LSLTTSGM 22>NP_001248348 Length = 296 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 142 LTLSTSGV 149>NP_004624 Length = 398 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 142 LTLSTSGV 149>NP_056028 Length = 1287 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLSTSG+ Sbjct: 836 SLSTSGI 842>NP_001230183 Length = 1241 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLSTSG+ Sbjct: 836 SLSTSGI 842>XP_006718232 Length = 1263 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLSTSG+ Sbjct: 812 SLSTSGI 818>XP_005252889 Length = 1307 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLSTSG+ Sbjct: 836 SLSTSGI 842>XP_006712799 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 167 LTLSTSGV 174>XP_006712798 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 57 LTLSTSGV 64>XP_006712797 Length = 398 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 142 LTLSTSGV 149>XP_006712796 Length = 402 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSLSTSGL 9 L+LSTSG+ Sbjct: 167 LTLSTSGV 174>NP_001018098 Length = 3628 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 +LSLSTS L Sbjct: 2135 NLSLSTSKL 2143>NP_060154 Length = 3710 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 +LSLSTS L Sbjct: 2092 NLSLSTSKL 2100>NP_060550 Length = 3585 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 +LSLSTS L Sbjct: 2092 NLSLSTSKL 2100>NP_060542 Length = 2144 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSLSTSG 8 +SLSTSG Sbjct: 464 VSLSTSG 470>NP_065872 Length = 3753 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 +LSLSTS L Sbjct: 2135 NLSLSTSKL 2143>NP_057381 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLSLSTSGL 9 SLS S SGL Sbjct: 239 SLSCSDSGL 247>NP_001092882 Length = 2004 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 S+SLS +GL Sbjct: 1783 SVSLSNTGL 1791>NP_006757 Length = 2004 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 S+SLS +GL Sbjct: 1783 SVSLSNTGL 1791>NP_001092883 Length = 2004 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 S+SLS +GL Sbjct: 1783 SVSLSNTGL 1791>NP_056128 Length = 1544 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 S SLSTSG Sbjct: 1194 SHSLSTSG 1201>NP_001185594 Length = 1525 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 S SLSTSG Sbjct: 1175 SHSLSTSG 1182>NP_849143 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 SLS +TSG Sbjct: 224 SLSFNTSG 231>NP_001020260 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>NP_001020259 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>NP_001020258 Length = 485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>NP_064565 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>NP_004834 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSLSTSG 8 LSL+TSG Sbjct: 534 LSLATSG 540>XP_006722571 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_006722570 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_006722569 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_006722568 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_005258365 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_006722567 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLSTSGL 9 SLST+GL Sbjct: 17 SLSTNGL 23>XP_005271537 Length = 1441 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 S SLSTSG Sbjct: 1091 SHSLSTSG 1098>XP_005271535 Length = 1504 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 S SLSTSG Sbjct: 1154 SHSLSTSG 1161>XP_006718868 Length = 1519 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLSLSTSG 8 S SLSTSG Sbjct: 1169 SHSLSTSG 1176>XP_005273706 Length = 1997 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLSLSTSGL 9 S+SLS +GL Sbjct: 1776 SVSLSNTGL 1784Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.112 0.251 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 370,980 Number of extensions: 655 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |