Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003599 17 4312 NP_115707 17 4312 NP_002067 16 5631 NP_001127911 16 5631 NP_001127910 16 5631 NP_665696 16 5631 NP_001773 16 5631 XP_005251689 16 5631 NP_001127909 16 5631 NP_055268 16 7355 NP_940818 16 7355 XP_005258804 16 7355 XP_005258803 16 7355 NP_001025147 15 9605 NP_008889 15 9605 NP_000882 15 9605 NP_072047 15 9605 NP_001276103 15 9605 NP_001276105 15 9605 NP_001276104 15 9605 NP_065802 15 9605 NP_001138551 15 9605 NP_065829 15 9605 NP_060520 15 9605 XP_005272398 15 9605>NP_003599 Length = 337 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LRTRRYA 8 LRTRR+A Sbjct: 125 LRTRRFA 131>NP_115707 Length = 255 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RTRRYAQ 9 RTR YAQ Sbjct: 182 RTRHYAQ 188>NP_002067 Length = 552 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLRTRRYAQ 9 S+RTRR+++ Sbjct: 541 SVRTRRFSK 549>NP_001127911 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLRTRRYA 8 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_001127910 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLRTRRYA 8 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_665696 Length = 1210 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLRTRRYA 8 +LRTR+Y+ Sbjct: 235 NLRTRKYS 242>NP_001773 Length = 359 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RTRRYAQ 9 RTR YAQ Sbjct: 315 RTRTYAQ 321>XP_005251689 Length = 355 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RTRRYAQ 9 RTR YAQ Sbjct: 311 RTRTYAQ 317>NP_001127909 Length = 1237 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLRTRRYA 8 +LRTR+Y+ Sbjct: 262 NLRTRKYS 269>NP_055268 Length = 222 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRTRRYAQ 9 +RTRRY + Sbjct: 67 VRTRRYVR 74>NP_940818 Length = 222 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRTRRYAQ 9 +RTRRY + Sbjct: 67 VRTRRYVR 74>XP_005258804 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRTRRYAQ 9 +RTRRY + Sbjct: 67 VRTRRYVR 74>XP_005258803 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRTRRYAQ 9 +RTRRY + Sbjct: 67 VRTRRYVR 74>NP_001025147 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLRTRR 6 SLRTRR Sbjct: 3 SLRTRR 8>NP_008889 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLRTRR 6 SLRTRR Sbjct: 3 SLRTRR 8>NP_000882 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLRTRRYA 8 S+RT RY+ Sbjct: 3 SVRTNRYS 10>NP_072047 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TRRYAQ 9 TRRYA+ Sbjct: 510 TRRYAE 515>NP_001276103 Length = 656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TRRYAQ 9 TRRYA+ Sbjct: 443 TRRYAE 448>NP_001276105 Length = 534 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TRRYAQ 9 TRRYA+ Sbjct: 321 TRRYAE 326>NP_001276104 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TRRYAQ 9 TRRYA+ Sbjct: 385 TRRYAE 390>NP_065802 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLRTRR 6 SLRTRR Sbjct: 68 SLRTRR 73>NP_001138551 Length = 615 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLRTRR 6 SLRTRR Sbjct: 68 SLRTRR 73>NP_065829 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRTRRYAQ 9 L+TRRY + Sbjct: 103 LQTRRYCR 110>NP_060520 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLRTRRYAQ 9 SLR +RY++ Sbjct: 411 SLRRKRYSR 419>XP_005272398 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SLRTRR 6 SLRTRR Sbjct: 3 SLRTRR 8Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.128 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 403,282 Number of extensions: 410 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |