Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1135 XP_006716142 18 1135 XP_005250088 18 1135 XP_006716141 18 1135 XP_005250085 18 1135 XP_006716140 18 1135 XP_005250084 18 1135 XP_005250083 18 1135 XP_005250082 18 1135 NP_005151 18 1482 XP_006724221 18 1482 NP_065777 17 2528 NP_003240 17 2528 NP_001610 17 2528 NP_542389 17 2528 XP_006714724 17 2528 XP_005248616 17 2528 NP_112199 17 3301 XP_006710997 17 3301 XP_006710996 17 3301 XP_006710995 17 3301 XP_006710994 17 3301 XP_005244860 17 3301 NP_001161362 16 7355 NP_056322 16 7355 NP_742093 16 7355 NP_001269238 16 7355 NP_001269239 16 7355 NP_473361 16 7355 NP_078951 15 9605 NP_775321 15 9605 NP_001106649 15 9605 NP_619728 15 9605 NP_006590 15 9605 NP_001004298 15 9605 NP_619727 15 9605 NP_775322 15 9605 NP_005473 15 9605 XP_005255834 15 9605 XP_006721188 15 9605 XP_005269549 15 9605 XP_005269548 15 9605>NP_733751 Length = 4911 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2011 SPRADVFQR 2019>XP_006716142 Length = 4927 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_005250088 Length = 4928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_006716141 Length = 4959 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_005250085 Length = 4979 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_006716140 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_005250084 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>XP_005250083 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2027 SPRADVFQR 2035>XP_005250082 Length = 4983 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S RADVFQR Sbjct: 2028 SPRADVFQR 2036>NP_005151 Length = 688 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 SLR D+FQ+ Sbjct: 156 SLRGDIFQK 164>XP_006724221 Length = 575 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 SLR D+FQ+ Sbjct: 43 SLRGDIFQK 51>NP_065777 Length = 704 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S+R D+F+R Sbjct: 137 SMRGDIFER 145>NP_003240 Length = 689 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S+R DV+QR Sbjct: 113 SMREDVYQR 121>NP_001610 Length = 689 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 +LR DVFQ+ Sbjct: 156 NLRGDVFQK 164>NP_542389 Length = 319 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 LRAD+F R Sbjct: 187 LRADIFSR 194>XP_006714724 Length = 681 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S+R D+F+R Sbjct: 114 SMRGDIFER 122>XP_005248616 Length = 686 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLRADVFQR 9 S+R D+F+R Sbjct: 137 SMRGDIFER 145>NP_112199 Length = 520 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 226 SLRTDVFVR 234>XP_006710997 Length = 298 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 4 SLRTDVFVR 12>XP_006710996 Length = 363 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 226 SLRTDVFVR 234>XP_006710995 Length = 389 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 95 SLRTDVFVR 103>XP_006710994 Length = 398 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 104 SLRTDVFVR 112>XP_005244860 Length = 404 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SLRADVFQR 9 SLR DVF R Sbjct: 110 SLRTDVFVR 118>NP_001161362 Length = 554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SLRADVF 7 SLR DVF Sbjct: 361 SLRGDVF 367>NP_056322 Length = 553 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SLRADVF 7 SLR DVF Sbjct: 361 SLRGDVF 367>NP_742093 Length = 530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 L+AD+F+R Sbjct: 362 LKADMFKR 369>NP_001269238 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 L+AD+F+R Sbjct: 362 LKADMFKR 369>NP_001269239 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 L+AD+F+R Sbjct: 368 LKADMFKR 375>NP_473361 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 L+AD+F+R Sbjct: 362 LKADMFKR 369>NP_078951 Length = 1186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLRADVFQ 8 SLR+ VFQ Sbjct: 1084 SLRSPVFQ 1091>NP_775321 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_001106649 Length = 1548 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 843 LSADIFQQ 850>NP_619728 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_006590 Length = 1531 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 826 LSADIFQQ 833>NP_001004298 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 LRA+VF++ Sbjct: 680 LRAEVFKK 687>NP_619727 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 844 LSADIFQQ 851>NP_775322 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_005473 Length = 395 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RADVFQR 9 R D+FQR Sbjct: 287 RTDLFQR 293>XP_005255834 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 559 LSADIFQQ 566>XP_006721188 Length = 1484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRADVFQR 9 L AD+FQ+ Sbjct: 779 LSADIFQQ 786>XP_005269549 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 LRA+VF++ Sbjct: 273 LRAEVFKK 280>XP_005269548 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRADVFQR 9 LRA+VF++ Sbjct: 719 LRAEVFKK 726Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.140 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 351,468 Number of extensions: 504 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |