Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_003706 17 3301 NP_001276978 17 3301 XP_006714460 17 3301 XP_006714459 17 3301 NP_057197 17 4312 XP_006721606 17 4312 XP_006721605 17 4312 XP_006721604 17 4312 XP_005256733 17 4312 NP_061849 16 5631 NP_037524 16 5631 XP_005269040 16 5631 XP_005264331 16 5631 NP_000250 16 7355 NP_001135967 16 7355 XP_005254459 16 7355 XP_005254458 16 7355 XP_005254457 16 7355 XP_005254456 16 7355 XP_005254455 16 7355 XP_005254454 16 7355 NP_001073936 15 9605 NP_001248755 15 9605 NP_003929 15 9605 XP_006722995 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SL SETINT Sbjct: 1561 SLFSETINT 1569>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SL SETINT Sbjct: 1561 SLFSETINT 1569>NP_003706 Length = 962 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +L+ETINT Sbjct: 329 ILTETINT 336>NP_001276978 Length = 973 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +L+ETINT Sbjct: 333 ILTETINT 340>XP_006714460 Length = 966 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +L+ETINT Sbjct: 333 ILTETINT 340>XP_006714459 Length = 969 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +L+ETINT Sbjct: 329 ILTETINT 336>NP_057197 Length = 764 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLSETINT 9 +L+SET+N+ Sbjct: 643 ALMSETVNS 651>XP_006721606 Length = 680 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLSETINT 9 +L+SET+N+ Sbjct: 643 ALMSETVNS 651>XP_006721605 Length = 680 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLSETINT 9 +L+SET+N+ Sbjct: 643 ALMSETVNS 651>XP_006721604 Length = 733 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLSETINT 9 +L+SET+N+ Sbjct: 643 ALMSETVNS 651>XP_005256733 Length = 763 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SLLSETINT 9 +L+SET+N+ Sbjct: 642 ALMSETVNS 650>NP_061849 Length = 506 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +++ETINT Sbjct: 252 IINETINT 259>NP_037524 Length = 535 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLLSETIN 8 SLL ET+N Sbjct: 509 SLLEETLN 516>XP_005269040 Length = 406 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLSETINT 9 +++ETINT Sbjct: 152 IINETINT 159>XP_005264331 Length = 535 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLLSETIN 8 SLL ET+N Sbjct: 509 SLLEETLN 516>NP_000250 Length = 1855 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1531 SLLTSTINS 1539>NP_001135967 Length = 1828 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1504 SLLTSTINS 1512>XP_005254459 Length = 1825 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1501 SLLTSTINS 1509>XP_005254458 Length = 1852 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1528 SLLTSTINS 1536>XP_005254457 Length = 1853 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1529 SLLTSTINS 1537>XP_005254456 Length = 1877 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1553 SLLTSTINS 1561>XP_005254455 Length = 1880 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1556 SLLTSTINS 1564>XP_005254454 Length = 1880 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLSETINT 9 SLL+ TIN+ Sbjct: 1556 SLLTSTINS 1564>NP_001073936 Length = 1848 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SLLSETIN 8 SLL+ TIN Sbjct: 1523 SLLTSTIN 1530>NP_001248755 Length = 1215 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SLLSETINT 9 SLL E +NT Sbjct: 274 SLLYECVNT 282>NP_003929 Length = 1153 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SLLSETINT 9 SLL E +NT Sbjct: 274 SLLYECVNT 282>XP_006722995 Length = 1203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SLLSETINT 9 SLL E +NT Sbjct: 274 SLLYECVNT 282Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.113 0.254 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,749 Number of extensions: 266 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |