Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1935 NP_001035957 18 1935 NP_001073922 18 1935 XP_006721991 18 1935 XP_006721990 18 1935 XP_006721989 18 1935 XP_005258041 18 1935 XP_006721988 18 1935 XP_006721987 18 1935 XP_006721986 18 1935 XP_005258040 18 1935 XP_006721985 18 1935 NP_079430 17 4312 NP_001124437 17 4312 NP_057305 16 5631 NP_001073942 16 5631 XP_005273894 16 5631 XP_005268514 16 5631 XP_005264358 16 5631 NP_001129115 16 5631 NP_001129116 16 5631 NP_878253 16 5631 NP_057153 16 7355 NP_001188408 16 7355 NP_065706 15 9605 NP_001155155 15 9605 NP_733764 15 9605 NP_653273 15 9605 XP_006723077 15 9605 XP_006721300 15 9605 NP_005297 15 9605 NP_001073905 15 9605>NP_000258 Length = 2818 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1078 SLLAGLPLQ 1086>NP_001035957 Length = 2839 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1078 SLLAGLPLQ 1086>NP_001073922 Length = 2190 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SLLAGLSL 8 SLLAGLSL Sbjct: 2000 SLLAGLSL 2007>XP_006721991 Length = 1632 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>XP_006721990 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>XP_006721989 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>XP_005258041 Length = 2836 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1078 SLLAGLPLQ 1086>XP_006721988 Length = 2846 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>XP_006721987 Length = 2849 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>XP_006721986 Length = 2854 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1075 SLLAGLPLQ 1083>XP_005258040 Length = 2857 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1078 SLLAGLPLQ 1086>XP_006721985 Length = 2867 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLLAGL LQ Sbjct: 1088 SLLAGLPLQ 1096>NP_079430 Length = 702 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 LLAGLSL+ Sbjct: 219 LLAGLSLR 226>NP_001124437 Length = 785 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 LLAGLSL+ Sbjct: 302 LLAGLSLR 309>NP_057305 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S LAGLSL+ Sbjct: 198 STLAGLSLK 206>NP_001073942 Length = 497 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLLAGLSL 8 S LAGLSL Sbjct: 269 SFLAGLSL 276>XP_005273894 Length = 520 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 L+AGLS+Q Sbjct: 95 LVAGLSMQ 102>XP_005268514 Length = 317 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S LAGLSL+ Sbjct: 55 STLAGLSLK 63>XP_005264358 Length = 504 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SLLAGLSL 8 S LAGLSL Sbjct: 269 SFLAGLSL 276>NP_001129115 Length = 467 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S LAGLSL+ Sbjct: 205 STLAGLSLK 213>NP_001129116 Length = 403 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S LAGLSL+ Sbjct: 141 STLAGLSLK 149>NP_878253 Length = 520 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 L+AGLS+Q Sbjct: 95 LVAGLSMQ 102>NP_057153 Length = 125 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S L+GLSLQ Sbjct: 49 SNLSGLSLQ 57>NP_001188408 Length = 1048 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 S L+GLSLQ Sbjct: 972 SNLSGLSLQ 980>NP_065706 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLL+GL L+ Sbjct: 218 SLLSGLKLR 226>NP_001155155 Length = 1060 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 +LLAG+S Q Sbjct: 373 ALLAGVSTQ 381>NP_733764 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 +LLAG+S Q Sbjct: 128 ALLAGVSTQ 136>NP_653273 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 +LLAG+S Q Sbjct: 452 ALLAGVSTQ 460>XP_006723077 Length = 384 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 LLAGL+L+ Sbjct: 14 LLAGLALR 21>XP_006721300 Length = 611 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLLAGLSLQ 9 SLL+GL L+ Sbjct: 81 SLLSGLKLR 89>NP_005297 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 LLAG+S++ Sbjct: 99 LLAGISIE 106>NP_001073905 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLAGLSLQ 9 LLAGL+L+ Sbjct: 14 LLAGLALR 21Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.133 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 363,973 Number of extensions: 560 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |