Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1482 NP_001035957 18 1482 XP_006721991 18 1482 XP_006721990 18 1482 XP_006721989 18 1482 XP_005258041 18 1482 XP_006721988 18 1482 XP_006721987 18 1482 XP_006721986 18 1482 XP_005258040 18 1482 XP_006721985 18 1482 NP_006808 16 7355 NP_789792 16 7355 XP_006718281 16 7355 NP_443105 15 9605 NP_001096034 15 9605 NP_001243668 15 9605 NP_001243667 15 9605 NP_001243666 15 9605 NP_076939 15 9605>NP_000258 Length = 2818 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1418 LKLMSKIL 1425>NP_001035957 Length = 2839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1439 LKLMSKIL 1446>XP_006721991 Length = 1632 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1449 LKLMSKIL 1456>XP_006721990 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1449 LKLMSKIL 1456>XP_006721989 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1449 LKLMSKIL 1456>XP_005258041 Length = 2836 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1418 LKLMSKIL 1425>XP_006721988 Length = 2846 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1428 LKLMSKIL 1435>XP_006721987 Length = 2849 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1449 LKLMSKIL 1456>XP_006721986 Length = 2854 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1436 LKLMSKIL 1443>XP_005258040 Length = 2857 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1439 LKLMSKIL 1446>XP_006721985 Length = 2867 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKLMSKIL Sbjct: 1449 LKLMSKIL 1456>NP_006808 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKLMSKIL 9 LK+M KIL Sbjct: 203 LKIMGKIL 210>NP_789792 Length = 1093 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLKLMSKIL 9 SLK+ SK+L Sbjct: 553 SLKIKSKLL 561>XP_006718281 Length = 983 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLKLMSKIL 9 SLK+ SK+L Sbjct: 443 SLKIKSKLL 451>NP_443105 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKL++K+L Sbjct: 159 LKLLTKVL 166>NP_001096034 Length = 208 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKLMSKIL 9 LKL++K+L Sbjct: 154 LKLLTKVL 161>NP_001243668 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLMSKIL 9 KLM+KIL Sbjct: 155 KLMAKIL 161>NP_001243667 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLMSKIL 9 KLM+KIL Sbjct: 124 KLMAKIL 130>NP_001243666 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLMSKIL 9 KLM+KIL Sbjct: 232 KLMAKIL 238>NP_076939 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLMSKIL 9 KLM+KIL Sbjct: 213 KLMAKIL 219Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.135 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 274,226 Number of extensions: 295 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |